MmuINT0127513 @ mm9
Intron Retention
Gene
ENSMUSG00000058398 | Prss43
Description
protease, serine, 43 [Source:MGI Symbol;Acc:MGI:2684822]
Coordinates
chr9:110731889-110734008:+
Coord C1 exon
chr9:110731889-110732049
Coord A exon
chr9:110732050-110733285
Coord C2 exon
chr9:110733286-110734008
Length
1236 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
TTCTTCCTCTTGTTTTCCAGGGA
3' ss Score
11.28
Exon sequences
Seq C1 exon
ATGCAGGGTTTGCATCCATTCTCCTCCAGGAGGTTCAGCAACGCATTCTCCTCCAGAAGCACTGTAACACGCTGTTCCAGAGACAGCTGGGGACATCGAAAAACCTAGTGATTAAAGGGATGATCTGCGGTCTGCAAGACTCAGGACAGAGTCTTTGTTGG
Seq A exon
GTCAGTTTATGGGACCCTTAAAGCCTGTATGGTTTGGTTGTCACCTCAAAGGTTTGAGTTATCTGCCACCTTTTTAGCCCTGTGTAGCCCTGGAACTCACTATGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTTAAAGGCATGCACCACCATGCCTGGCTCCCCAGATCCATTTCTTCCCTCTGTGTAGGCTGCACTCTTGAGAAGGAGGAGGCTTTGGGCTGTTCGTGGGTAGAAACTTGAATTTCCTGGAAAGGAAAGGGTACTATTGTTGTGACAGAGCACAGGCATGTCTAAGAGTTCAGAGGTCTTATGCTGAAGAAAGTTTTGTATGTCTTTGGAGTGATGGGATAAGACATGTGGCCATAAACATGGTTAAAGTTGGAATATATGCAGCCTGGAGGGCTAAATCACACTTCTAGACTGGCCCAGCCAGAACTGGGAGGTGAAGCTTGGTGTGCGTGGTCAGTTACCATCTAGATAAGTGAGTCCCTTTGTTGTATGATGCCTGACTGGAGCCTTTTGAGCTTGTTTCCTCGTCTAGGAGTCTTAACAGAGTCTGAGGTGGCAGAAAGGTGTGTGTGAGGGTCCTTGGGTTAGGTTGGGGCAAAGCCATGCAGAATGGTGCTAGAAATGGATGCTAGACTTGTCTCAGGCTCTTGAAGGCAATGCGGTTGACATGTGGAGGAAGTTCCTCAATGAGGTTAGGGCAGGAGAACATCTAAGGCAGTGGTAAGGGCACTCAATGATGATGCTCAAAATGTTTAAGTTCTTGAAGACCCAGGACCGACCAGCCTAACTAGACACTGGCCTGATGTTGGAGTGGGCTCTGCAGGCTACATACTCTAGAGGCCAGGGCTACCACTGTGGCTGGGTTATGAGTTATGACAGGCTTAGGCGTTTCTCAGACAGGTTTGGTACCTGTAGATTAGGGACTCTCAAGGTATATTTCACTATACAACTGCTATTCTGGGCTCCATTGGATTCGCCACTTGTGCCTGTGTGCCTAATCATCACCGAGCACGTATCGTTGCCTAGAGAATGTTGATGTTTTCATAGGAGATTTTCATCTGTTAGATCTCAGTCATTAAAAGAAGCTAGGCCTGGGAGAGGCTCTGGGTGCCCAAGAAAGTGTCCCAGCACCTTGCAATGCAGTCTGCTCTCTCTTCCATCCCAGCCATTGGTTTCTTCCTCTTGTTTTCCAG
Seq C2 exon
GGAGATTCTGGGAACCCCCTTGTCTGCGAATCTGACAACACGTGGACCCAGGTGGGGATCATGAGCTGGGGCATCAACTGCAATGGAGTCCCTGTCCTCTCAGTTTACACAGACATCGCTGAGTACAATGAGTGGGTCAGCTATGTCTTAAGTCAGGCTTCCCGTATGGATCCCATGGGAGTCTTGGTCCTATACCTGTCTCTGGTGTTTCCCTTGGCCCTCCTGGTAGCTCTGTGACCTCCTTAGGCCCTGTCTTCCTGAGAGTTTTGAGTCTCCCACTGTGCCTTTTCTCCATTTTCCCTTTCTGTCTTTCTGCCCTTTCTTCAAATTCCAGTTAGCAGCTATTGCCACAGTAGACTGTGGCAGGGAGATTGGGGGCTGCAAAGTGCTCTGACTGGTGTTCTGGTTACTTGCCTCATGATACACCCACACTTGGTGGACTAACCTGGACTAGAGGGCCAGCTTGCCTGCTAGGTGGAGAACCATGACTCCATGATCTTGGGGACATCTGCCAAGAAGAGATAATATCACCTGGCTCTGTTTACATCACACAGCTTAGTGACCACTGAAAGAGAGGGAGAACAACCGGGTGTGGTGGCACACACCTGTAATCCCAGCTCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGTCTAAAAATCTAAAAAGTGAGCTCCAGGACAGCCAGGGCTACACAGAGAAACCCTATCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058398-Prss43:NM_199471:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.5=57.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGCATTCTCCTCCAGAA
R:
GCCAAGGGAAACACCAGAGAC
Band lengths:
342-1578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: