RnoINT0118774 @ rn6
Intron Retention
Gene
ENSRNOG00000029649 | Prss45
Description
serine protease 45 [Source:RGD Symbol;Acc:1303021]
Coordinates
chr8:119112678-119113828:+
Coord C1 exon
chr8:119112678-119112831
Coord A exon
chr8:119112832-119113801
Coord C2 exon
chr8:119113802-119113828
Length
970 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CGTCCTCCTTTTCTCCTCAGGTT
3' ss Score
12.56
Exon sequences
Seq C1 exon
GACAGCACGCCGGCGCTATCGCTGCAGTCCACAGGGACACACTCATGGATGGCTACGTCACTGCGCCTCCTGGACGCTGGGCCTGGATCCTTGAGGCGCTGGATCCCAACCTGCTTTGCGGCGCTACTGTTGCTGCCTCCACGGCCAAACTTAG
Seq A exon
GTGAGGCAGGCACCTCCTTCTCTCTTGTCCTTTGTTCCTGTGTCCTCTCCCCTCCAGTCTAGCTCAGGTTGGCTATTCCCTTCCGCCACCTGAAACTTTTGTGTGCCATCCGCACCTCGCTGTCACCTTTCTTCTGCCACTCCTAAGTTTCTCAGGCCACAACTACACCGTGGCCTCCTGGAGACAACAGTCCTGAGGAGCATCCGGGACTTCCCTCCACGCCCAGGCGACTTCCGCCTTCCGTGTCTCCATCCTCTCGAAAGGATGATATTCTAAACCTTGGCTTCTTTCCATTTCCAGCAGAGGTCAAGCCCTTGGGTGCTGCTGTCTTTTCACACTCCCCTGTCCCACAGCCCCCAAATATCCCCCCAAATCTGACTGCCAAAGAGAGTGTTTCCTGAGTGGGGTGGGGCTGGAGCAGGGCCCTCCCCATGCTGTGAGGCGGAGTTTACATAAGTCATACCCCACCACACCCCAATGCGTGCACCACCTTTCTCCTGCCCTCCCTCCCAGGGCCAGCCTTCCCCAAGAGCCATGAGCACTGGGCGCTGCCCTCTGGCACGTTTATTTTCCATGTAATCCTCAGCCCAATTCCTGACGTGTTCTTCCCCTTACTGTTCCTGGTTTTGTTTGTTTGATTTACATCTCTCTCCTTTTTAAATTTCCTGTGGCTTCTCCCTCAGCCCTTCCTCCTCACCCCTCTTTGTTCTTTCATTGCTGGGGAGTGGGGGAAAGGTCTCGTGAGCCCTAAGGTAGCCGTGATGTCCTGAACCTCCTGTCTCCATCTCCTTAGTGCTGAGATTACACACACACACTGGGGAACAGCATGAGATTAGGTACCATTCGATGAATGAGTGAATGGACTGGGTGGTGATGATGATGGTGATGGTGATGATGATGACGATGACACCCCTTTACTGCTATCCTGCCACAAGTTCCTGCCTCACACCCGTCCTCCTTTTCTCCTCAG
Seq C2 exon
GTTATAATGAGGACCACGCTGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029649:ENSRNOT00000043249:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]