HsaEX1031704 @ hg38
Exon Skipping
Gene
ENSG00000231150 | RP1-207H1.3
Description
NA
Coordinates
chr6:38944221-38953099:-
Coord C1 exon
chr6:38953048-38953099
Coord A exon
chr6:38947123-38947302
Coord C2 exon
chr6:38944221-38944321
Length
180 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCTTCCTTCCCACAGGCA
3' ss Score
12.59
5' ss Seq
TGGGCAAGT
5' ss Score
2.48
Exon sequences
Seq C1 exon
TGAAGCCCATGAGCCACTAGAAGCCACATGTTCTGCCATGTGGAGAAGAATG
Seq A exon
GCAGGCCAGACTGATGGCCACCTGACTGCAGGTCTCCGCTGAACTTTTGCAACCTTCCTGAGAACTGCCCCTCACCCCACTTCTGGCCCAATCGGTGGTGTAAGAGGAGTGGGAGAGAAATAACTCATGATGGCATGGGAAGAGCATGAGCTTTGCCACTTATTGGCAATGGGCTCTTGG
Seq C2 exon
GGGACTTGGGAATCTGTGGCTCTGAGTGCAACAACACCTTTAGAACAATGTGTAAACCTTCTTCTTACTGTCGGCCCCTCTGCAACCTGGAGACAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231150-'0-2,'0-1,1-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCCCATGAGCCACTAGA
R:
TCTGTCTCCAGGTTGCAGAGG
Band lengths:
149-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains