HsaEX1031705 @ hg38
Exon Skipping
Gene
ENSG00000231150 | RP1-207H1.3
Description
NA
Coordinates
chr6:38936293-38953099:-
Coord C1 exon
chr6:38953048-38953099
Coord A exon
chr6:38944221-38944223
Coord C2 exon
chr6:38936293-38936392
Length
3 bp
Sequences
Splice sites
3' ss Seq
TCTGCAACCTGGAGACAGAGCAG
3' ss Score
-20.93
5' ss Seq
CAGGTCTCA
5' ss Score
-0.37
Exon sequences
Seq C1 exon
TGAAGCCCATGAGCCACTAGAAGCCACATGTTCTGCCATGTGGAGAAGAATG
Seq A exon
CAG
Seq C2 exon
AGAGAGTACATCCTCAAATTGAGGTGTGGCATGATGATTTGGCTGCCCAGAGGAGAACCTGTCTTTCCCATCTAAAGTGGGAGGTCAAGCCAAGTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231150-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCCCATGAGCCACTAGA
R:
GCAGCCAAATCATCATGCCAC
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains