HsaEX1034473 @ hg38
Exon Skipping
Gene
ENSG00000283294 | RP11-681B3.4
Description
NA
Coordinates
chr18:14234687-14244784:+
Coord C1 exon
chr18:14234687-14234815
Coord A exon
chr18:14243012-14243223
Coord C2 exon
chr18:14244562-14244784
Length
212 bp
Sequences
Splice sites
3' ss Seq
AGTATATTCATTTGTTTTAGAAA
3' ss Score
6.5
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATATAAGAAACTCCTGGAAATGACAATAAATATGTTAATGTATTTGGAAATGAAGACATCGATTGCCATGGAGACTTAAATACAGATCAACTGAAAATGAATATTCTGATTAAGAAGCTAAAACATAAG
Seq A exon
AAACAAGCACAATATGAAAAACAATTAGAGCAGTTAAACAAGGATAATACGGCTTCACTAAATATGAAGGAACTCACACTTAAAGATGTGGAATGTAAATTCTCCAAAATGAAAACTACTTATGAAGAGGTTACAACCAAATTAGAAGAATATAAAGAAGCCTTTGCAGCAGCATTGAACGCTAACAATTCCATGTCAAAAAAATTAACGAA
Seq C2 exon
ATCTAATAAGAAAATAGCAATGATCAGCACCAAGCTCCTTATGGAGAAAGAGTGGGTGAAATATTTTCTCAGCACTCTTCCTACAAGGCGAGGTCAAGAGTCACCTTGTGTTGAAAATCTTACTAGTATAGTACTCAACAGTAAATATATTCCCAAAATGACCGTAAGAATTCCTACTTCAAACCCTCAGACCTCAAATAACTGCCAGAACTACTTGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283294-'7-8,'7-7,9-8
Average complexity
C1
Mappability confidence:
100%=60=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGATTGCCATGGAGACT
R:
TCAGTCAAGTAGTTCTGGCAGT
Band lengths:
296-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains