HsaINT1037367 @ hg38
Intron Retention
Gene
ENSG00000283294 | RP11-681B3.4
Description
NA
Coordinates
chr18:14243012-14244784:+
Coord C1 exon
chr18:14243012-14243223
Coord A exon
chr18:14243224-14244561
Coord C2 exon
chr18:14244562-14244784
Length
1338 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TGTCTTTGCTATCTTTACAGATC
3' ss Score
11.22
Exon sequences
Seq C1 exon
AAACAAGCACAATATGAAAAACAATTAGAGCAGTTAAACAAGGATAATACGGCTTCACTAAATATGAAGGAACTCACACTTAAAGATGTGGAATGTAAATTCTCCAAAATGAAAACTACTTATGAAGAGGTTACAACCAAATTAGAAGAATATAAAGAAGCCTTTGCAGCAGCATTGAACGCTAACAATTCCATGTCAAAAAAATTAACGAA
Seq A exon
GTAAGTCCAAACATACACTCATAGAAAATGAATTCAGCTCATTAATTTGTTTTGAAAGCATAATTTTTAGTGAGATGGCTTCAGAATATTAGTAGGAAGTGAATGCTAATTTGACAATGTAATTTTGGAAAATAATGTTAGTAAGTAATCTTACCTTTAAAATGTTAGTCAAGGATAGTTTCTGTCTCTCCTCTCATTTTTTTTTTTTTTTTTGCTTTTGTATGGCTTTTTTCCCCTGAAAAGTCTCTTGTAGTTAATCTGTTAGTTTTTTTTACTAAGTATTTTTGAAGCTTTATAATTAATAAAGTGATCTTGTTTTAAATTACTTGTCAGAATTTCCCTAAATAGTAATATTAATGAGTTTATTTTTCAGTAGATCACGACCTAAACCCAAGTGTCAAGTGGTACTGCTACTCTGGGCACAATCGTTTTTGATTGTGATCTTTAGTATTATCAATAGAAGGTGCCTCAAGAAAGACTATTTGTGTAACATATTCAAGATGTTATAGAAAGGCATCCTTATGAAATAGGGAACAATTATCACAGGAATTTAAAGAAGTGTAATTCACAAAGTGGTTAAAAAATAACACCTTGTTCAGTCTGAAGGGGTGTGTGGAGGGCAAAAAGAACAAGCCCCACCTCCAGTGCCTTGGTCACAGTGCTGGGGGCTAATTGCCTTCAGAGATGCTTTAGTTCTTTTTGATCAACAACCAAACAATCTAGTTCTCCCCTAGGAGTTGTTGCTCTGAATTATTCCTCATTACCAAATGTTTAATTGGTCCTAGATAATTGGTGAAATGTACAGGGGTGAAACCTAAAACTGGTTTACTAAACACAAGTATTCCTAGATTTTTTTTGTTCATTTTAGTTTTGTTAACCTACATTAAGGAGTACAACATGATGTTTTGATATAATTATTTCTAGTGAAGTGGTTCTTATAATCAAGCAAATCAACATATTCCTTTTCCCATGTTGTTACCCTTTAAATACAAGTATTTCAAATGGAATCTTCAGAATCTTACAAGTAGAGCCATTTTAGAAGGCAGCAAGTTTTATCTGTTGAGCCATACATCACTGGTAGCCATTTCTCTTCCCTGTCTACTTTGTTTGAGCTGCTTGTTCAGTATAAATCACCTTAGAAACAAAGGTGCTTCTTTAGAATGATTTTCAAAGTATAATTCCTTACAACAGGTATGCTCTCACACATCTTCAGTGTGAAAACACTGTTTAGTGGGTAATTTGGTTTACTCTCAGGGCAAGTTTTTAAAAACTACGAGTCATTAAGAATCATTTAAGGAAAAATGAAATACTAAGCATTTGTCTTTGCTATCTTTACAG
Seq C2 exon
ATCTAATAAGAAAATAGCAATGATCAGCACCAAGCTCCTTATGGAGAAAGAGTGGGTGAAATATTTTCTCAGCACTCTTCCTACAAGGCGAGGTCAAGAGTCACCTTGTGTTGAAAATCTTACTAGTATAGTACTCAACAGTAAATATATTCCCAAAATGACCGTAAGAATTCCTACTTCAAACCCTCAGACCTCAAATAACTGCCAGAACTACTTGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283294:ENST00000577614:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTCACACTTAAAGATGTGGA
R:
GGCAGTTATTTGAGGTCTGAGGG
Band lengths:
351-1689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains