GgaINT0109021 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24105894-24106783:+
Coord C1 exon
chr1:24105894-24106129
Coord A exon
chr1:24106130-24106536
Coord C2 exon
chr1:24106537-24106783
Length
407 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CATGTTTTTAAATATTTCAGAGC
3' ss Score
8.37
Exon sequences
Seq C1 exon
ACACAGGCAGCCTCCCAGGACAGGTTAGAACAAATCAGAGCCAATCATCATGCCTCACTGAGAAACCAACTAAAGCACAGAATTAAAGATCTCGAATGTGAGTTGGACAGAATAAAAAATACTCAACAGGACAGTATTTTTCAAAAAGAATCCACACAGGCTGAAGTGGAAAAATACAAAGAAATGTATCTGGAAGAAATGAAAATTAGAAGAAGCCTAGCAAATAAGCTGGAAAG
Seq A exon
GTAAGTCCATGCTTTTTTGGAGTGATAACAAGATGTGAAGTAGCAGTAGCTTGCATGAAAAACCTTGTACTGTTTCCTCCTAAAATCCCTCTTTTATGTCTTGTCAGCATTATGGATGTAAACCTAAGATTACATTTTTATAAAAGAGCCCTCTAAAACCCTTCCCCTTTATTTTTGGAACCGCCATCATTTCACTTCAGTGTTCTAGCAGTCACACCACTAGTCGTGGCATCACTAGCGTGTGTTTGAAGTTGATAGCATTTAACAGGTGGCCTTTGGGTCCCTCTCATTTTGAACTCTTAATGCCTTCAGTTTTCAAAAGCTGAAGAGTAGTCAAAGACCTGGAAGAAGCGACTCTGCAAAAATATTACCAAAGATAATTCTTTGCATGTTTTTAAATATTTCAG
Seq C2 exon
AGCCAATGAGAGACTAGCAGAAGCCAATGCTAAGCTCCTTCAGGAGCGCCACAGAAGCAAATCTTTAATTGCAAGTAGCATTGTCACTGGAGGTCTGTCTGCAAGTCCAGTTCTGTATTCAACTGAACTGGGACATCTTGGCAACAATTTGGCACTGAACAGAAGTCTCAGCCTAGGAGGAAGCTTCCTAGGCACAGCTGGGAATGCGTTATCATCAAGAAACAAGGTTGAAGCCTACATGGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCCAGGACAGGTTAGAA
R:
ACAGAACTGGACTTGCAGACA
Band lengths:
343-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]