HsaINT0008662 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27301811-27303640:-
Coord C1 exon
chr10:27303423-27303640
Coord A exon
chr10:27302040-27303422
Coord C2 exon
chr10:27301811-27302039
Length
1383 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTCTTCTGCAATCTTCACAGAAC
3' ss Score
8.76
Exon sequences
Seq C1 exon
GCACAAGCAGCATCTCAAGAAAACTTAGAGCAGTTTAGAGAGAATAATTTTGCTTCAATGAAAAGTCAGATGGAACTCAGAATTAAAGATCTGGAATCTGAACTCTCCAAAATAAAAACTTCTCAAGAAGACTTTAATAAAACCGAACTGGAAAAATATAAGCAACTCTATCTAGAAGAATTAAAAGTTAGAAAATCTTTGTCAAGTAAACTAACCAA
Seq A exon
GTAAGTCAAAATATAGAATCATAGGAAATAAATTAAGCTCATTAATTTGCCTTGAAAGCATAATTCTTAGGTTCATGAGATTAATGGGAAGTGAAAGCTAAATAGGTAATATAATTTTGGAAAATGTTAGTAAATTAACTTACCTTTAAAATGTGAGTCCAGGACAGTTTATGTCTTTCCTCTGTTTTTTTTTTTTTAATTTTATATGGCTTTTCCGTTAATATTCTTAGGTAGTTAACTGGATCTATGTCTTTCAGCTATGTGCTTTTAAAACTTTGTAATTTAGACATTGATATTGTCATCAGATTGCTTATCAGCATTGCCATAAATATAATTATTAATGAGTTGGGCTGTTTTTTGGAAAATTACAACTTAAACCAGAAGGGTCAAGTATCACTACTACTCTGCACATTCTGGCACTCCATAAATGAACTTTCCTTGATTGTGATATCTGGTATTATCACTACAGGGTGCCATGAGACAAACTACCCTGTATAGTTTTTCTACTACTTAAAGGCATGCTAGTGAAATAGGGAATGATTAACGTAGGGATGAAGGGAAGTATATTTTATAAAGTGGTTAAAAATAACACCTTGGTCAGCCTGAGGGAGTGTGTGGAAAACAGGTCAGGCCCCACCTCTGATGCCTTGGGGACAATGTTAGGAGCTAACTGCCTTTGAGACTCTTTAGTTCTTTTTGATCACCAACTCAGCTATCTTCTTTTCCCCTACAATTTTTTGCTCTGAATTATTCCTTGGGGCCAGATGCCTAATATTTTTCCAGATAATGGGTGAAATAAATGTAAAAGGGTGGTGAAAGCAAATGCTTGCACATGTCTTGAGGAATTTTTTAATCTCTAAACTGGTTTACTAAATACAAGTATTTTTAGCTGGGCTTTTTCCTTTGTTATTAGTTTTATTAATTGTATGTATCAAAACATGATGTTTTTGATATATTTGTACATGGTGAAATGGTTATTATAGTCAAGCAAATTAACATATTTATCATGTCACATATTTACCCTTTAAAGACAAGTATTTTTAATGGCATCCTCAGGAATCTTACCAGTGGAGCATTCCAGAAGGCAGCAGGTGTTACCTGTGAAGTTATACATCATTGGTAGCCATTTTCTTCCCTTCCCTACTTTGCTTGAATTACTTGTTTGTTGGAAACTACCCTAGAAACATATGCACTTCTTTAGAACAGTCTAAAAATTATAATTGCATACAGTAGGCATGGTCTGACACATTTTTCAGTGTTAAAATACTGGTTAATGGGAAATTTCATTTACTCCTATGGTAACTTTTTAAAAATTGCAAGTCTTTTAGGAATCATTTAGGGAAAAGTAAAATACTAAGCATGTGTCTTCTGCAATCTTCACAG
Seq C2 exon
AACTAATGAGAGGCTAGCAGAGGTCAACACCAAACTTCTTGTGGAAAAACAGCAGAGCAGATCTTTGTTCACCACTCTCACTACCAGGCCAGTCATGGAGCCACCTTGTGTGGGAAATCTTAATAATAGTTTAGATCTCAACAGAAAACTTATTCCAAGAGAAAACTTAGTGATCTCTACCTCAAATCCACGGGCTTCAAATAATAGCATGGAGAACTACTTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.490
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PU(46.4=83.9),PF119023=DUF3422=PU(60.0=77.4)
A:
NA
C2:
PF120013=DUF3496=PD(51.8=75.3),PF119023=DUF3422=PD(37.5=39.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAGTCAGATGGAACTCAGA
R:
AGCCCGTGGATTTGAGGTAGA
Band lengths:
356-1739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)