BtaINT0018335 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17910914-17912587:-
Coord C1 exon
chr13:17912374-17912587
Coord A exon
chr13:17911143-17912373
Coord C2 exon
chr13:17910914-17911142
Length
1231 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTGTTTTCCATCTTCCCCAGGAC
3' ss Score
11.33
Exon sequences
Seq C1 exon
AAGCAGCATCTCAGGAGAACTTAGAGCAGTTACAAGAGAAGAATAATGCTTCCATAAGAAGTCAGATGGAACTCAGAATTAAAGACTTGGAATCTGAACTCTCCAAGGTGAAAACTTTGCAAGAAGATTCTCATAAAGCAGAGTTGGAAAAATATAAGCAACTCTACCTAGTAGAACTAGAAGTTAGAAAGTCGTTGGAAGGTAAACTAGACAA
Seq A exon
GTAAGTCAAAACACAGAATCACAGAAAGAAAATTTAGCTCGTTAATTTGTCTCTAAAGCCTAATTTGTATAGAGCGCAGTTCATGAGATGAGTAGGAAGTGAAAGCTAACTAGATGGTCACTGCTAGAGGGCGCCCTGAGACAAACTATTAATACTGTGTCCTTTTAAGTTTTTCTACACTGCATAAAAGGCATGCTTGTCAAATTGGGGGCAATTAAAACAGGGGTGAAAGGCAGGATAATTCACAGAGTGGCTAGAAATAGTATGGTGACCTGAGTGGGGGTGTGGAGGATGCAAAGGGCAGATGGCACCTCCAGTGCCTAGTCCAGGTTTCCCCACTGTCTGAAAGCAGAGCACTCCTAGGAAGCCTTGCATAAGCCAAAGCAGCATAAAGCAAAGAAGCAGGCACCCGAGGGCACGTTCTGCTAGTTGAAGCCTAAAATGAATATGCACAAGTGAAGCACAGGTGCTCCCAGATAGGGTTCAGGGTTGTGGTGACTTAACACTGAGACGTGGGATGTGGCTTCCAGGGAAGGAGCTCAGTTGGGCCAGTCTGCCTGCTTGGGGAGCATGATGCCTCTCACTGTAAAACGTACAGTGAACCTTTTTATATGAAATCAAAAAGTCTCTTCAAAAAAAAATTTTTTTTTGATTATCAAAAACAGATGCCAACGTAGGCCTTTCCTAGAAGTGAAGTGACATAAAGTGAACTTTGGAAAAGCAGGGGATACTTGTAATTGTTCCTGGGGCTGTTTTAGCTCTTTTCAATCACCCGCTGACTTTCTTGTCCTCCCCTCTAGATTGTGACTCTAGATGATTCCTCAAAGCCAAAAGCTTAATTTCTCCAAGGTCATGAGTGAAACGTGTATACAAGGGTGGTGAAAGGAAGCACTTGAACGTGGCTTTGTGGGACGGGGTGTTTCTTCATCCCTGAACTGTTTCCTGGAGGCAGGTGTGTCTCAGAGGCAGCAGGTGTCACTGTGAGACCACCTCCCTTTCTCTCTGGTGCCCTTTCTCTCCTCTCCCAACTGTGACTTGTTACTTGAGGAGCCCCAGACACATGTGTACTTCTTTAGAGCAAGATTACAACTGTTATTGTTTACAGGAGGTCTGCTCTGTGTTTTCAGTGCTCAAACAGTTTATTGGGAATTCCATATACTATATGGAAACTTTAAAAATGCAAATCATTTTGGGAAACATGAATGAAATTGGTGTTTTCCATCTTCCCCAG
Seq C2 exon
GACTCATGAGAGGCTGGCGGTGATCAGCACCAAACTTGAGGTGGAGAAAGAGCAGAACAGATCTTTACTCAGCACTCTTAGCACGAGGCCAGTCCTGGAGCCCCCTTGTGTTGGAAATTTCAATAATCCTGTAGTGCTCAATGGAAATCTTACTCCAAGAGCAAACGTAGGTTTTTCTACCTCAATTCCACGCCCTTCGAATAACAGCATGGAGACTTACTTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288:ENSBTAT00000022622:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=NA C2=0.416
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PU(47.3=73.6)
A:
NA
C2:
PF120013=DUF3496=PD(51.8=75.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAATCTGAACTCTCCAAGGT
R:
TCCATGCTGTTATTCGAAGGGC
Band lengths:
342-1573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development