HsaEX1036489 @ hg38
Exon Skipping
Gene
ENSG00000137872 | SEMA6D
Description
semaphorin 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr15:47470474-47600896:+
Coord C1 exon
chr15:47470474-47470545
Coord A exon
chr15:47574275-47574389
Coord C2 exon
chr15:47600865-47600896
Length
115 bp
Sequences
Splice sites
3' ss Seq
GAACTTGTTGGATTTTGCAGGCT
3' ss Score
6.18
5' ss Seq
CAGGTCCTG
5' ss Score
0.7
Exon sequences
Seq C1 exon
AATGCGTAATCCTGGATCTCTTGTTCGCAAATCGACAGCCTGAAGCCCTCTGGAAGCCCAAGACTGCTGGAG
Seq A exon
GCTGGTCTGAGACTTCAGATTGATTGTCCTCATCCAGTTATGACTTGGCTCTTCTGGAATTGAAAGGGAGACCTCAGCTGGCTGGTCTGATACATCTACCCCATCAGTATCCCAG
Seq C2 exon
GTTTTTGACCAGACAAGCCAACCTTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137872_MULTIEX3-2/8=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGTAATCCTGGATCTCTTGT
R:
AAAAGGTTGGCTTGTCTGGTCA
Band lengths:
98-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains