HsaEX0057173 @ hg38
Exon Skipping
Gene
ENSG00000137872 | SEMA6D
Description
semaphorin 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr15:47470474-47759907:+
Coord C1 exon
chr15:47470474-47470545
Coord A exon
chr15:47600865-47600896
Coord C2 exon
chr15:47759745-47759907
Length
32 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTCTTTTTTCAGGTT
3' ss Score
13.9
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AATGCGTAATCCTGGATCTCTTGTTCGCAAATCGACAGCCTGAAGCCCTCTGGAAGCCCAAGACTGCTGGAG
Seq A exon
GTTTTTGACCAGACAAGCCAACCTTTTTCAAG
Seq C2 exon
GTAGCTCAGTGGCATTTCTGAGCAGGGGCCACCCTGACTTCACCTTGGCCCACCATGAGGGTCTTCCTGCTTTGTGCCTACATACTGCTGCTGATGGTTTCCCAGTTGAGGGCAGTCAGCTTTCCTGAAGATGATGAACCCCTTAATACTGTCGACTATCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137872_MULTIEX3-4/8=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAAATCGACAGCCTGAAG
R:
GCACAAAGCAGGAAGACCCTC
Band lengths:
125-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development