MmuEX0041645 @ mm9
Exon Skipping
Gene
ENSMUSG00000027200 | Sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]
Coordinates
chr2:124124311-124479479:+
Coord C1 exon
chr2:124124311-124124391
Coord A exon
chr2:124315721-124315748
Coord C2 exon
chr2:124479317-124479479
Length
28 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTTCTCCTTTCTAGATT
3' ss Score
12.16
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAACTCCAACCTGAGCAGATGCCAGTTGACATGGGAACTCTGAGGCCAGCAATTTAAGGATTTTCACGTTTGCTTGCAGTG
Seq A exon
ATTCTACCAAGACAGAGCCATCTCCAAG
Seq C2 exon
GTAGCTAAGTGGGACTTCTGAGGAGGGGGAGCTCAGATTTCTTCTTGGCCAACCATGGGGTTCCTTCTGCTTTGGTTCTGCGTGCTGTTCCTTCTGGTCTCCAGGTTACGGGCGGTCAGCTTCCCAGAAGACGATGAGCCCCTCAACACGGTTGACTATCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027200-'4-14,'4-7,6-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGAGCAGATGCCAGTTG
R:
AAATCTGAGCTCCCCCTCCTC
Band lengths:
114-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: