HsaEX1036493 @ hg38
Exon Skipping
Gene
ENSG00000137872 | SEMA6D
Description
semaphorin 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr15:47714527-47759907:+
Coord C1 exon
chr15:47714527-47714587
Coord A exon
chr15:47718668-47718873
Coord C2 exon
chr15:47759745-47759907
Length
206 bp
Sequences
Splice sites
3' ss Seq
CTGGAAATGCTTTACGGAAGCGT
3' ss Score
-3.05
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATGACCGTTATGCTTCAAACTGGACTGTAAACAAAATGACTACTTTCCACTGATGGGAAAT
Seq A exon
CGTCTTGGACAGGGTCTCCGCCAGGCGACAAGAGCTCGGTGCTGAGATGTGTTACGTTCTCATCTCCCCATCAATTATGGATGGAAACAAATAAGGAAGAGTCAATTTTGCTGAGCCCCTTCTCCGGCAACGAGAGGCGTTCTGCAGCCGGGAGGGAGCCGCCGCTCGCGCCGGCAGCCGCTGGCAGGGGCATGGTGAGGAGGAAG
Seq C2 exon
GTAGCTCAGTGGCATTTCTGAGCAGGGGCCACCCTGACTTCACCTTGGCCCACCATGAGGGTCTTCCTGCTTTGTGCCTACATACTGCTGCTGATGGTTTCCCAGTTGAGGGCAGTCAGCTTTCCTGAAGATGATGAACCCCTTAATACTGTCGACTATCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137872_MULTIEX3-7/8=6-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTTATGCTTCAAACTGGACT
R:
AGTGATAGTCGACAGTATTAAGGGGT
Band lengths:
221-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains