HsaEX1039108 @ hg38
Exon Skipping
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8707777-8714042:-
Coord C1 exon
chr11:8713998-8714042
Coord A exon
chr11:8708303-8708313
Coord C2 exon
chr11:8707777-8707854
Length
11 bp
Sequences
Splice sites
3' ss Seq
ATGGAGGTGGATCAAGAAAGGGA
3' ss Score
-10.78
5' ss Seq
GAAGCAAAA
5' ss Score
-7.64
Exon sequences
Seq C1 exon
ATGAAAACAGTGAGAGCGAGAGCGACTCTGATGACAGGTTCAAAG
Seq A exon
GGAGAAAAGAA
Seq C2 exon
CCAAGTGGGAAAGGGCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCGACTCTGATGACAGGT
R:
AAAACAAGCCGAAGCAGCCAA
Band lengths:
100-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains