RnoEX0086441 @ rn6
Exon Skipping
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174148661-174151696:-
Coord C1 exon
chr1:174151627-174151696
Coord A exon
chr1:174149355-174149365
Coord C2 exon
chr1:174148661-174148738
Length
11 bp
Sequences
Splice sites
3' ss Seq
TTCCTTGGGCATGGATCAAGGGA
3' ss Score
-1.02
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
TGAAACCTTTTCTTTCATGCTGACTGGGGAAGACGGTAGCAGACGCTTTGGCTATTGTAGGCGCTTACTG
Seq A exon
GGAGAAAAGAG
Seq C2 exon
CCAAATGGGAAAGGGCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTAGGCTGCTTCGGCCTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(32.9=100)
A:
NO
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Inclusion Isoform:
ENSRNOT00000064902fB14405
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGCTGACTGGGGAAGAC
R:
CGGCTGATGACACAGTACACC
Band lengths:
107-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]