RnoEX0086446 @ rn6
Exon Skipping
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174148661-174151696:-
Coord C1 exon
chr1:174151627-174151696
Coord A exon
chr1:174149490-174149669
Coord C2 exon
chr1:174148661-174148738
Length
180 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTCTCACTTCATAGCAT
3' ss Score
9.94
5' ss Seq
TGGGTGATA
5' ss Score
-0.34
Exon sequences
Seq C1 exon
TGAAACCTTTTCTTTCATGCTGACTGGGGAAGACGGTAGCAGACGCTTTGGCTATTGTAGGCGCTTACTG
Seq A exon
CATACCTCTATCCTGTGTCTCTCTGTTCCTTTCTCGCCCTCCTATCAGAAAACAGCAGGCTTTGGAGGAAAGACAGCAAGATGAAAGGCTGCACAGACTCCTGGTTACAGCCTTCTACTTATGCAAGCCTAGACAAAGGCCTAATCTTCGAGAACTCAGCTGTCTCCTCTATAAAACTGG
Seq C2 exon
CCAAATGGGAAAGGGCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTAGGCTGCTTCGGCCTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934_MULTIEX1-2/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(32.9=100)
A:
NO
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Inclusion Isoform:
ENSRNOT00000064902fB14407
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTTTTCTTTCATGCTGACTGG
R:
CTTGGAAAACAGGCCGAAGCA
Band lengths:
146-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]