MmuEX1028976 @ mm10
Exon Skipping
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:109535294-109538345:-
Coord C1 exon
chr7:109538276-109538345
Coord A exon
chr7:109536031-109536347
Coord C2 exon
chr7:109535294-109535371
Length
317 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTTTCACTTCATAGCAT
3' ss Score
8.83
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
TGAAACCTTTTCTTTCATGCTGACTGGGGAAGATGGCAGCAGGCGCTTTGGCTATTGTAGGCGCTTACTG
Seq A exon
CATACCTCTACCCTGTGTCTGTGTTCCTTTCCCTCCTTCCTATCAGAAAACAGCATGTTTGGAGGTAAGACAGCAAGACGAAAGGCTGCACAGACTCCTGGCTACAGCCTTCTACTTATGCAAGCTTAGGCAATGGCTTAATCTTCATGAACTCAGCTGTCTCCTCTATAAAACTGGGTGATAATGCCACTCTCATACTCTTTTTGTATATAGTACCAGCGCTAGGACTCTGTTTTAGGAAACATTTCATAGAAAGTCATTCCCTTCTCTTGTTTTGCTTTTGCCTTCCTTGGGCTCGGATCAAAGGGAGAAAAGAG
Seq C2 exon
CCAAGTGGGAAAGGGCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTAGGCTGCTTCGGTTTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024_MULTIEX1-4/12=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(32.9=100)
A:
NO
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Inclusion Isoform:
ENSMUST00000077909fB20174
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types