MmuEX0045126 @ mm10
Exon Skipping
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:109535294-109536347:-
Coord C1 exon
chr7:109536284-109536347
Coord A exon
chr7:109536031-109536041
Coord C2 exon
chr7:109535294-109535371
Length
11 bp
Sequences
Splice sites
3' ss Seq
TCCTTGGGCTCGGATCAAAGGGA
3' ss Score
1.98
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
CATACCTCTACCCTGTGTCTGTGTTCCTTTCCCTCCTTCCTATCAGAAAACAGCATGTTTGGAG
Seq A exon
GGAGAAAAGAG
Seq C2 exon
CCAAGTGGGAAAGGGCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTAGGCTGCTTCGGTTTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024-'49-42,'49-41,50-42
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Inclusion Isoform:
ENSMUST00000077909fB20174
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTACCCTGTGTCTGTGT
R:
TGACACAGTACACCTCTGGCA
Band lengths:
104-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types