HsaEX1039895 @ hg38
Exon Skipping
Gene
ENSG00000173011 | TADA2B
Description
transcriptional adaptor 2B [Source:HGNC Symbol;Acc:HGNC:30781]
Coordinates
chr4:6965215-7057952:+
Coord C1 exon
chr4:6965215-6965277
Coord A exon
chr4:7043571-7043849
Coord C2 exon
chr4:7057675-7057952
Length
279 bp
Sequences
Splice sites
3' ss Seq
GCCGGGCGGCGGGCGGCGAGCGG
3' ss Score
-11.59
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
TGGTGTGATCTTGGCTCACTACAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGC
Seq A exon
CGGGGGAAGATGGCGGAGCTGGGGAAGAAGTACTGCGTGTACTGCCTGGCCGAGGTGAGCCCGCTGCGCTTCCGCTGCACCGAGTGCCAGGACATCGAGCTGTGCCCCGAGTGCTTCTCGGCCGGCGCCGAGATCGGCCACCACCGCCGCTACCACGGCTACCAGCTGGTGGACGGCGGGCGCTTCACGCTCTGGGGGCCCGAGGCCGAGGGCGGCTGGACCAGTCGCGAGGAGCAGCTGCTGCTGGACGCCATCGAGCAGTTCGGCTTCGGAAACTGG
Seq C2 exon
TACTTGGGAGGCTGAGGTAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCGGTGAGCTGAGATCACGCCACTACACTCCAGCCTGGTGACAGAGCAAGACTCCATCTCAAAAAAAATCTAAGCAAACTATCTTTGAGTCAAAAAAAGTTGGATAACTCATCTATATTTGAAATAATGCTGTCTGAATGGCCAACATCCCAAGAATGTATTAAAAACAGCAACCCTGCCTACCGTTTTGATGACCTTTTTCCATATTAAACAAGTTGAGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173011_MULTIEX1-1/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.174
Domain overlap (PFAM):
C1:
NA
A:
PF0064319=zf-B_box=WD(100=55.6),PF0056912=ZZ=WD(100=46.7),PF0024926=Myb_DNA-binding=PU(48.9=25.6)
C2:
PF0024926=Myb_DNA-binding=PD(46.8=6.6),PF0443312=SWIRM=WD(100=24.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCTCACTACAACCTCCG
R:
TCAAAACGGTAGGCAGGGTTG
Band lengths:
296-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains