HsaEX1039897 @ hg38
Exon Skipping
Gene
ENSG00000173011 | TADA2B
Description
transcriptional adaptor 2B [Source:HGNC Symbol;Acc:HGNC:30781]
Coordinates
chr4:6965215-7057952:+
Coord C1 exon
chr4:6965215-6965277
Coord A exon
chr4:7054062-7055025
Coord C2 exon
chr4:7057675-7057952
Length
964 bp
Sequences
Splice sites
3' ss Seq
TCTGCCCTTTGTCATCGTAGGAA
3' ss Score
8.73
5' ss Seq
AAAGCGGCT
5' ss Score
-12.52
Exon sequences
Seq C1 exon
TGGTGTGATCTTGGCTCACTACAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGC
Seq A exon
GAAGATATGGCTGCCCACGTTGGTGCTTCCCGGACTCCCCAAGAGGTGATGGAGCATTACGTGAGCATGTACATCCACGGGAACCTGGGGAAGGCCTGCATCCCCGACACCATCCCCAACCGCGTGACAGACCACACCTGTCCCAGCGGAGGCCCCCTCTCACCCAGCCTCACCACCCCGCTGCCCCCGCTGGACATCTCTGTGGCTGAGCAGCAGCAGCTGGGCTACATGCCGCTGCGGGATGATTACGAGATCGAGTATGACCAGGATGCCGAGACGCTCATCAGCGGGCTCTCTGTCAACTATGATGACGACGACGTGGAGATCGAGCTGAAGCGCGCCCACGTGGACATGTACGTGCGGAAGCTGAAAGAGAGACAGCGGCGGAAGAACATCGCCCGTGACTACAATCTGGTGCCAGCCTTCCTGGGGAAGGACAAGAAGGAGAAGGAAAAGGCGCTGAAGCGCAAGATCACCAAGGAGGAGAAGGAGCTGCGCCTGAAGCTGAGGCCGCTGTACCAGTTCATGTCATGCAAGGAGTTTGATGACCTTTTTGAAAACATGCACAAAGAAAAAATGCTCCGGGCCAAGATCCGAGAACTGCAGCGGTACCGGCGAAACGGGATCACCAAGATGGAAGAGTCGGCAGAGTACGAGGCAGCGCGGCATAAACGGGAGAAGAGGAAGGAGAACAAAAACCTAGCCGGCTCCAAACGGGGAAAGGAGGACGGCAAAGACAGCGAGTTCGCCGCCATTGAGAACCTTCCAGGCTTCGAGCTCCTGTCAGATCGCGAGAAGGTGCTCTGCAGCTCTTTAAACTTGAGTCCAGCCCGCTACGTGACTGTGAAGACTATTATAATTAAAGACCACCTCCAGAAGCGGCAAGGAATCCCCTCCAAAAGCCGCCTTCCTAGCTACCTGGACAAAGTCCTAAAGAAAAGGATTTTGAATTTCCTCACAGAAA
Seq C2 exon
TACTTGGGAGGCTGAGGTAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCGGTGAGCTGAGATCACGCCACTACACTCCAGCCTGGTGACAGAGCAAGACTCCATCTCAAAAAAAATCTAAGCAAACTATCTTTGAGTCAAAAAAAGTTGGATAACTCATCTATATTTGAAATAATGCTGTCTGAATGGCCAACATCCCAAGAATGTATTAAAAACAGCAACCCTGCCTACCGTTTTGATGACCTTTTTCCATATTAAACAAGTTGAGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173011_MULTIEX1-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.179 C2=0.174
Domain overlap (PFAM):
C1:
NA
A:
PF0024926=Myb_DNA-binding=PD(46.8=6.6),PF0443312=SWIRM=WD(100=24.2)
C2:
PF0024926=Myb_DNA-binding=PD(46.8=6.6),PF0443312=SWIRM=WD(100=24.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTGATCTTGGCTCACTAC
R:
TGGAAAAAGGTCATCAAAACGGT
Band lengths:
318-1282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains