HsaEX1039896 @ hg38
Exon Skipping
Gene
ENSG00000173011 | TADA2B
Description
transcriptional adaptor 2B [Source:HGNC Symbol;Acc:HGNC:30781]
Coordinates
chr4:7043391-7057952:+
Coord C1 exon
chr4:7043391-7043849
Coord A exon
chr4:7047955-7048139
Coord C2 exon
chr4:7054062-7057952
Length
185 bp
Sequences
Splice sites
3' ss Seq
TCCCCTAATCCCTGAGACAGGTG
3' ss Score
2.39
5' ss Seq
GAGGTCTGG
5' ss Score
2.59
Exon sequences
Seq C1 exon
AGGGGGGACGCGGCCCGGCTGGCTGGCTCTGGCGGCGGCTGGGCTGGGGCCGCGGTGGCGGCAGCCGCGGCGGCGGGCGGCGGTTGCTCGTGCGCGGCGGCGGCGGCGGGTCCCGCGGGCGGCGGGGCGCTGACGGCCGGGGGCGCGGCGGCTGCGGCGGGCCGGGCGGCGGGCGGCGAGCGGGGGAAGATGGCGGAGCTGGGGAAGAAGTACTGCGTGTACTGCCTGGCCGAGGTGAGCCCGCTGCGCTTCCGCTGCACCGAGTGCCAGGACATCGAGCTGTGCCCCGAGTGCTTCTCGGCCGGCGCCGAGATCGGCCACCACCGCCGCTACCACGGCTACCAGCTGGTGGACGGCGGGCGCTTCACGCTCTGGGGGCCCGAGGCCGAGGGCGGCTGGACCAGTCGCGAGGAGCAGCTGCTGCTGGACGCCATCGAGCAGTTCGGCTTCGGAAACTGG
Seq A exon
GTGCTCCCCACTTTTACAAACGAGGAAACAACTGTGGGTGATGTGGGAACGTGGAATTTCAACCCAAGGCTTCTGACTCCATGCCTAGAACCATCCGTTTCATTGTTCACCAGCCATGCCGCAGGATCCCCTAGAATTCCCAGGGATCCCCTGAGATCTGCTGGATTGTCACCTCTGAGGCCGAG
Seq C2 exon
GAAGATATGGCTGCCCACGTTGGTGCTTCCCGGACTCCCCAAGAGGTGATGGAGCATTACGTGAGCATGTACATCCACGGGAACCTGGGGAAGGCCTGCATCCCCGACACCATCCCCAACCGCGTGACAGACCACACCTGTCCCAGCGGAGGCCCCCTCTCACCCAGCCTCACCACCCCGCTGCCCCCGCTGGACATCTCTGTGGCTGAGCAGCAGCAGCTGGGCTACATGCCGCTGCGGGATGATTACGAGATCGAGTATGACCAGGATGCCGAGACGCTCATCAGCGGGCTCTCTGTCAACTATGATGACGACGACGTGGAGATCGAGCTGAAGCGCGCCCACGTGGACATGTACGTGCGGAAGCTGAAAGAGAGACAGCGGCGGAAGAACATCGCCCGTGACTACAATCTGGTGCCAGCCTTCCTGGGGAAGGACAAGAAGGAGAAGGAAAAGGCGCTGAAGCGCAAGATCACCAAGGAGGAGAAGGAGCTGCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173011_MULTIEX1-2/4=1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.097 C2=0.177
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=55.6),PF0056912=ZZ=WD(100=46.7),PF0024926=Myb_DNA-binding=PU(48.9=25.6)
A:
PF0024926=Myb_DNA-binding=PD(3.8=1.6)
C2:
PF0024926=Myb_DNA-binding=PD(46.8=6.6),PF0443312=SWIRM=WD(100=24.2)
Main Inclusion Isoform:
ENST00000310074fB27493
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGCCATCGAGCAGTTC
R:
CTGCTCAGCCACAGAGATGTC
Band lengths:
247-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains