HsaEX1039946 @ hg38
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:158994312-159001189:+
Coord C1 exon
chr2:158994312-158994412
Coord A exon
chr2:158994902-158994988
Coord C2 exon
chr2:159001080-159001189
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTCTTTTTAAACCAGTGA
3' ss Score
6.02
5' ss Seq
AGAGCTGAG
5' ss Score
-27.37
Exon sequences
Seq C1 exon
TGCCCAGGCTGTAGTGCAGTGGTGCATAGCTCACTGCAGCCTCCAACTCCTGGGGTCAAGCAATTTTCCAGCCTCTGCCTCCTGAGTAGCTAGGACTACAG
Seq A exon
TGATACTAAAGGTGTATTTAAGCCTGTTTTGAGTTTGTTGAAACATCACTCCAAAGTGGAAACATGGAAGGCTTCGAGCTGGACAGA
Seq C2 exon
GAGCTGACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAAGAGAAAATTGTGAACTAAGGCCCCCTGCCCCCTTTTCCTGGTGCATGTGAAGTTATCAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-'9-4,'9-3,10-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCTCACTGCAGCCTCCAA
R:
TCACATGCACCAGGAAAAGGG
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains