HsaEX1039947 @ hg38
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:158968671-159001189:+
Coord C1 exon
chr2:158968671-158968782
Coord A exon
chr2:158970687-158970814
Coord C2 exon
chr2:159001080-159001189
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCTTCAGGACTTCCTCCTAGGGT
3' ss Score
4.47
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCGCCTCGGGAGCCGGAGGAGAGGCAGCCGCGGAGCGCCGAGCTGGCCTCGCCCCGAGGCCCGGCCCTGGGTGTGGGGAACCGCGCTGAGGAGCTGGAAACTTTCCCGGCAG
Seq A exon
GGTTGTTCCTGTTACCTGCCAAGTGAACTTGGTTCAGGCTTCCGGACTGTTGTGATTTGACAATAAGAGATGGGAAATAGTGTCATCGATTTTAGTGGAAGCAGGAAAAGTCCACAAATAAATTTAAG
Seq C2 exon
GAGCTGACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAAGAGAAAATTGTGAACTAAGGCCCCCTGCCCCCTTTTCCTGGTGCATGTGAAGTTATCAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183_MULTIEX1-1/15=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGGTGTGGGGAAC
R:
TTTGATAACTTCACATGCACCAGGA
Band lengths:
154-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains