HsaEX1040742 @ hg38
Exon Skipping
Gene
ENSG00000187720 | THSD4
Description
thrombospondin type 1 domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
Coordinates
chr15:71256613-71411823:+
Coord C1 exon
chr15:71256613-71256715
Coord A exon
chr15:71275011-71275915
Coord C2 exon
chr15:71411687-71411823
Length
905 bp
Sequences
Splice sites
3' ss Seq
TATTGTTTCTCTCTTCCAAGAAC
3' ss Score
6.48
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTATGTCCAGAAAGCAGTAGAAGTATCCGGGAGGTACAGTGTGCATCCTACAACAACAAGCCATTCATGGGCCGGTTTTATGAGTGGGAACCATTTGCAGAAG
Seq A exon
AACTCAGCTTTCTACAAAGACTGCCTTGCTCAGTTGTCATCGTGTGGCTGGTCGGGGTGTCAGTATTCTAGTGTTCCTACTCAACAGATGCAGGAATAGAGACTCACAGGGGTAGGATGGTCTGCCCTGGGTCACAGAACAACAGAGAAGAATCAGAGTCACCGAGAAGTTACATAAGCACAGCCCACCAAGCTGAGAGCAGCGATTTGCCTGAGGGCCTGCAGAAGAATTTCTCCCTCCATGCATCCAAGCCATGACTGATTCATTTCCTTTAAAAACAAACAAATGTGTTTTTACATCAAGACTACTAAGACTTCTCCAGGAAATCCTGGGTCTCTGTCTTAATCTCTTGTAGCACAGTTCTCTCACTCTCCGAGCAGAGGTCACCATGTTGTAAATTGGTGGGGACATGTCCTGAAGGAGTGGTTGGGACATTTTGTTGTACCTTGCATGGACCTTGAGATATTAGTATCTGGTGCATATCAAGAGGTTTTCAGAGTTAGATTTACAACTACGGTGTGATCAGTGAATATGCAACTTATATTTAAATTACACATTCAGCCCATGCTTTATATATTTATCAGACATTCTCACCCCACTGATACAGTCTGATTTGGCTTGGCTCTGTGTTCCCACCTAAATCTCATCTTGAATTGTAGTTCCCATAATCCCCACCTGTTATGGGAGGGTCCAGGTGGGGATAATTGAATCATGGGGGCAGTTACCCCTTGCTGCTGTTCTCGTGATAGTGAGTTAGTTCTCACGGGATCTGTTGGTTTTATAAGGGGCTTTTCCTCCTTTTGCTTGGTGCATCGCCTTACTGCCACCGTGTGAGGAGGGCTGTGTTTGCTTCCCCTTCTGCGATGATTCTAAGTTTTCTGAGGCCTCCCCAGCCATGCTGAACT
Seq C2 exon
TAAAAGGCAATCGCAAATGTGAGTTGAACTGCCAGGCAATGGGCTACCGCTTCTATGTACGGCAAGCTGAGAAAGTCATCGATGGCACCCCCTGTGACCAGAACGGCACGGCCATCTGTGTGTCTGGGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187720_MULTIEX2-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000355327fB28045
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCAGAAAGCAGTAGAAGT
R:
CTTGCACTGCCCAGACACAC
Band lengths:
238-1143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains