HsaEX6075597 @ hg38
Exon Skipping
Gene
ENSG00000187720 | THSD4
Description
thrombospondin type 1 domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
Coordinates
chr15:71256613-71660734:+
Coord C1 exon
chr15:71256613-71256715
Coord A exon
chr15:71411687-71411823
Coord C2 exon
chr15:71660530-71660734
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATTTCATTTTACTTTGGTAGTAA
3' ss Score
3.66
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTATGTCCAGAAAGCAGTAGAAGTATCCGGGAGGTACAGTGTGCATCCTACAACAACAAGCCATTCATGGGCCGGTTTTATGAGTGGGAACCATTTGCAGAAG
Seq A exon
TAAAAGGCAATCGCAAATGTGAGTTGAACTGCCAGGCAATGGGCTACCGCTTCTATGTACGGCAAGCTGAGAAAGTCATCGATGGCACCCCCTGTGACCAGAACGGCACGGCCATCTGTGTGTCTGGGCAGTGCAAG
Seq C2 exon
AGCATTGGCTGTGATGACTACTTAGGCTCCGACAAAGTCGTGGACAAATGTGGGGTGTGTGGAGGAGACAACACGGGCTGTCAGGTTGTGTCGGGCGTGTTTAAGCATGCCCTCACCAGCCTGGGCTACCACCGCGTCGTGGAGATTCCCGAGGGAGCCACGAAAATCAACATCACGGAGATGTACAAGAGCAACAACTATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187720_MULTIEX2-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF059869=ADAM_spacer1=PU(35.0=59.4)
Main Skipping Isoform:
ENST00000355327fB28045
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGTACAGTGTGCATCCT
R:
TTGATTTTCGTGGCTCCCTCG
Band lengths:
245-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains