GgaEX6007649 @ galGal4
Exon Skipping
Gene
ENSGALG00000004087 | THSD4
Description
thrombospondin, type I, domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
Coordinates
chr10:5898865-6030107:+
Coord C1 exon
chr10:5898865-5898967
Coord A exon
chr10:5947433-5947569
Coord C2 exon
chr10:6029903-6030107
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTCTTTTTCTACAGTGA
3' ss Score
10.24
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATGTGTCCTGAAAGCAGCAGAAGTATTAGAGAAGTGCAGTGTGCATCATACAATAACAAGCCATTTATGGGTCGATTTTATGAATGGGAACCTTTTGCAGAAG
Seq A exon
TGAAGGGAAGTCAGAAGTGTGAGCTGAATTGCCGTGCTATAGGCTACCGATTCTATGTCAGACAAGCTGAAAAGGTGATAGATGGGACACCATGTGACCAAAACGGAACTTCAATCTGTGTGGCAGGGCAGTGCAAG
Seq C2 exon
AGCATTGGCTGTGACGACTATCTGGGTTCAGACAAGGTGATTGACAAGTGTGGAATATGTGGAGGGGACAACACTGCTTGCAAGGTTGTTTCTGGAGTTTTCAAACACACCCTAACAAATCTCGGCTATCACAAGATAGTGGAAATTCCTGAAGGAGCTACTAAAATTAACATTACTGAGATGTCAAAGAGCAACAACTATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004087-'7-18,'7-11,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF059869=ADAM_spacer1=PU(35.0=59.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGAAAGCAGCAGAAGT
R:
GCTCCTTCAGGAATTTCCACT
Band lengths:
258-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]