BtaEX6015194 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003604 | ADAMTSL4
Description
Bos taurus ADAMTS-like 4 (ADAMTSL4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101061]
Coordinates
chr3:20191771-20193311:-
Coord C1 exon
chr3:20193209-20193311
Coord A exon
chr3:20192336-20192472
Coord C2 exon
chr3:20191771-20191975
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCTTCTACCCTGTCTCTTAGTTC
3' ss Score
7.73
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
CCCTGCCCCGCTGAGCAGCCAGACCCCCGGGCCCTGCAGTGTGCAGCCTTTGACTCCCAGGAGTTCATGGGCCAACTGTACCAGTGGGAGCCCTTCACGGAAG
Seq A exon
TTCAGGGTTCTCAGCGCTGTGAGCTGAACTGCCGTCCCCGTGGCTTCCGCTTCTATGTCCGTCACACCCAAAAGGTCCAGGACGGGACCCTGTGTCAGCCTGGATCCCTGGACATCTGTGTGGCTGGACGCTGTCTG
Seq C2 exon
AGCCCTGGCTGTGATGGCATCCTTGGCTCTGGCCGGCATCCAGATGGCTGTGGCGTCTGTGGGGGTGATGATTCTACCTGTCGCCTCGTCTTGGGGAACCTCACTGAGCGGGGTGGCCCTCTGGGTTATCAGAAGATCTTGTCCATTCCTGCCGGGGCCTCCCGACTCCAGATTGCCCAGCTCCGGCCCAGCTCCAACTACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003604-'5-9,'5-7,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF059869=ADAM_spacer1=PU(35.3=59.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGCCAACTGTACCAGTG
R:
CAAGGTAGTTGGAGCTGGGC
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]