MmuEX6072578 @ mm9
Exon Skipping
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95485575-95487333:-
Coord C1 exon
chr3:95487231-95487333
Coord A exon
chr3:95486133-95486269
Coord C2 exon
chr3:95485575-95485779
Length
137 bp
Sequences
Splice sites
3' ss Seq
GCCTGTGTCTCCTCCTTTAGTTC
3' ss Score
9.5
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
CCTTGCCCCCCTGAGCAGCCAGACCCCAGGGCCCTACAGTGTGCCGCCTTTGACTCCCAGGAATTCATGGGCCAGCTGTACCAGTGGGAGCCCTTCACCGAAG
Seq A exon
TTCAGGGCTCCCAGCGCTGTGAACTGAACTGCCGCCCCCGTGGCTTCCGATTCTATGTCCGACACACTGAAAAGGTGCAGGATGGAACCCTGTGTCAGCCTGGATCCCTAGACATCTGTGTGGCTGGACGCTGCCTG
Seq C2 exon
AGCCCTGGCTGTGATGGGGTCCTTGGCTCTGGCAGGCGTCCGGATGGCTGCGGAGTCTGCGGGGGTGATGGTTCTACCTGCCGCCTGGTTTCGGGAAATCTCACTGACCGAGGGGGCCCCTTGGGCTATCAGAAGATCCTGTGGATCCCTGCCGGGGCCTCCCACCTTCACATTTCCCAGTTGCGACCCAGTTCCAATTACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850-'8-10,'8-9,9-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF059869=ADAM_spacer1=PU(35.3=59.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTTGACTCCCAGGAATT
R:
GGTCGCAACTGGGAAATGTGA
Band lengths:
247-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: