RnoEX6010593 @ rn6
Exon Skipping
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197808664-197810286:-
Coord C1 exon
chr2:197810184-197810286
Coord A exon
chr2:197809255-197809391
Coord C2 exon
chr2:197808664-197808868
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATCTATATCTTGTCCTTTAGTTC
3' ss Score
7.42
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
CCTTGCCCCCCTGAGCAGCCAGACCCCAGGGCCCTGCAGTGTGCCGCCTTTGACTCCCAGGAATTCATGGGCCAGCTGTACCAGTGGGAGCCCTTCACCGAAG
Seq A exon
TTCAAGGCTCCCAGCGCTGTGAACTGAACTGCCGCCCCCGTGGCTTCCGATTTTATGTCCGTCACACTGAAAAGGTGCAGGATGGGACCCTGTGTCAGCCTGGATCCCTAGACATTTGTGTGGCTGGACACTGCCTG
Seq C2 exon
AGCCCCGGCTGTGATGGGATCCTTGGCTCTGGCAGGCGTCCGGATGGCTGTGGAGTCTGTGGGGGTGACGGCTCTACCTGCCGTCTCGTTTCGGGGAATCTCACTGACCGAGGGGGCCCCTTGGGCTATCAGAAGATCCTGTGGATTCCTGCGGGAGCCTCCCATCTTCGCATTTCCCAGTTCCGACCCAGTTCCAATTACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385-'9-16,'9-15,11-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF059869=ADAM_spacer1=PU(35.3=59.4)
Main Skipping Isoform:
ENSRNOT00000074156fB640
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTTGACTCCCAGGAATT
R:
CTGGGTCGGAACTGGGAAATG
Band lengths:
250-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]