MmuEX0047255 @ mm10
Exon Skipping
Gene
ENSMUSG00000032289 | Thsd4
Description
thrombospondin, type I, domain containing 4 [Source:MGI Symbol;Acc:MGI:2672033]
Coordinates
chr9:60056851-60376055:-
Coord C1 exon
chr9:60375953-60376055
Coord A exon
chr9:60252650-60252786
Coord C2 exon
chr9:60056851-60057055
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCCCACCTCTCTCTCTGTAGTAA
3' ss Score
8.7
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCGTGTCCAGAAAGTGGTAGAAGTATCCGGGAGGTACAGTGTGCATCCTACAACAACAAGCCATTCATGGGCCGGTTTTATGAATGGGAACCATTTGCAGAAG
Seq A exon
TAAAGGGTAATCGCAAGTGTGAGCTGAACTGCCAGGCAACCGGCTACCGCTTCTACGTCCGGCAAGCTGAGAAGGTCATCGATGGCACACCCTGTGATCAGAATGGCACGGCAATCTGTGTGTCGGGGCAGTGCAAG
Seq C2 exon
AGCATTGGCTGTGACGACTTCCTGGGATCTGACAAAGTCTTGGACAAGTGCGGGGTGTGTGGAGGTGATAACACGGGCTGCCAGGTGGTGTCGGGAGTGTTCAAGCACGCCCTCACCAGCCTGGGCTACCACCGGGTTGTAGAGATTCCCCAAGGAGCTACGAAAATTAACATTACAGAGATGCACAAGAGCAACAACTACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032289-'18-30,'18-20,21-30
Average complexity
S
Mappability confidence:
89%=100=85%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF059869=ADAM_spacer1=PU(35.0=59.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGTACAGTGTGCATCCT
R:
ATTTTCGTAGCTCCTTGGGGA
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types