HsaEX1040743 @ hg38
Exon Skipping
Gene
ENSG00000187720 | THSD4
Description
thrombospondin type 1 domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
Coordinates
chr15:71256613-71411823:+
Coord C1 exon
chr15:71256613-71256715
Coord A exon
chr15:71348152-71348490
Coord C2 exon
chr15:71411687-71411823
Length
339 bp
Sequences
Splice sites
3' ss Seq
TTTGAAATGCTTGTTTTCAGGTC
3' ss Score
7.93
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTATGTCCAGAAAGCAGTAGAAGTATCCGGGAGGTACAGTGTGCATCCTACAACAACAAGCCATTCATGGGCCGGTTTTATGAGTGGGAACCATTTGCAGAAG
Seq A exon
GTCATCCCTGGGAATCTCAGTTCCAGGTTGTCTTTTCGGCTCCTCAATACCCAACCCTTTTGTAGAGCCTCCTCCTCCAGACCAGTGCTTTTCAAACTTTAATGTGCGGAAGAACCACTGAAAACTGTTGTTAGAATGCAGGTTCTGATTCAGTAGGTCCACATGAACCTGCGATTCTGCATTTTAATGAACCTCAATTGATGCTGTTGTTGCTGCTCTGAGGACCATGCCAACAGGCCCCGAATGTCTGCCATATGGAAGCTCAGAATTGTCAACACTCCCTCTGCTTTTCCTTTGTCTTCCCTCAGAACACCTGCTCACCATGACCTGTACATCCAG
Seq C2 exon
TAAAAGGCAATCGCAAATGTGAGTTGAACTGCCAGGCAATGGGCTACCGCTTCTATGTACGGCAAGCTGAGAAAGTCATCGATGGCACCCCCTGTGACCAGAACGGCACGGCCATCTGTGTGTCTGGGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187720_MULTIEX2-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000355327fB28046
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCAGAAAGCAGTAGAAGT
R:
CTTGCACTGCCCAGACACAC
Band lengths:
238-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains