HsaEX1044644 @ hg38
Exon Skipping
Gene
ENSG00000198939 | ZFP2
Description
ZFP2 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:26138]
Coordinates
chr5:178895894-178912719:+
Coord C1 exon
chr5:178895894-178895974
Coord A exon
chr5:178898579-178898675
Coord C2 exon
chr5:178912584-178912719
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCTTCTTTCCCTTCCCTCAGCTC
3' ss Score
9.93
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
AAATGTAGTCTGGCGCTCCGGGCTGTAAGCGCCGGTCGCGGCTGTGTCGGTCGCCGCTGCTCCCGCTCCTGCTGGGAGAGG
Seq A exon
CTCTGCCTCCTTTGGCTTCTGTCCCTCCCCAAGGAAGAACCCCACAGGAAGGAAGGAGAAGGCAATGGCTGCTTGGCCTCTGCCATTGGGAGCTCGG
Seq C2 exon
TTTCAGGAGTCAGTGACCTTCAAGGATGTGTCCATAGATTTCTCTTGGGAAGAGTGGATTCAAGCAGATTCTGCTCAGAGGATGACCGTGTATGGGGAGGTGATGCTGGAGAACTACAGGAACCCGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198939_MULTIEX1-1/7=C1-2
Average complexity
C1
Mappability confidence:
78%=100=78%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTAGTCTGGCGCTCCG
R:
TCCCCATACACGGTCATCCTC
Band lengths:
179-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains