RnoEX0101099 @ rn6
Exon Skipping
Gene
ENSRNOG00000030750 | Zfp2
Description
zinc finger protein 2 [Source:RGD Symbol;Acc:1562610]
Coordinates
chr10:36400303-36406810:-
Coord C1 exon
chr10:36406710-36406810
Coord A exon
chr10:36402484-36402573
Coord C2 exon
chr10:36400303-36400471
Length
90 bp
Sequences
Splice sites
3' ss Seq
GCTTCCCTTCTGTCCCTCAGCTC
3' ss Score
7.9
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATTGGAAGCCCTGGCGACGCCTCATGGCCTTGTGGGAAATGTAGTCCCGCGTGCCCAGTGCGGCTGCCTTCGCGGCCAGCCTCTGGTTTCTTCAGTGACTG
Seq A exon
CTCTGCCTCTAGAGATGGTGAATTCTCTAGGAAGGCCCTACAGGAAGGAGGAAGGCAATGGCTGTTGGAACTCTGCCATTGGGAGCTCAG
Seq C2 exon
GAATCACTGATATACAAAGATGTGTCTGTGGACTTCACTTGGGAGGAGTGATGCAGCTATGTTCTGCACAGAGGAACCTGTATGGCAGGGTGATGCGGGAGAACTGGAGCACCCTGGTCTCCCTGGGTGAGCAACCCCACCTTCAGCCTTCTGCCTATGGAATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030750-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATGGCCTTGTGGGAAAT
R:
GCCATACAGGTTCCTCTGTGC
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]