MmuEX0053079 @ mm9
Exon Skipping
Gene
ENSMUSG00000049321 | Zfp2
Description
zinc finger protein 2 [Source:MGI Symbol;Acc:MGI:99167]
Coordinates
chr11:50724208-50729644:-
Coord C1 exon
chr11:50729611-50729644
Coord A exon
chr11:50725782-50725906
Coord C2 exon
chr11:50724208-50724378
Length
125 bp
Sequences
Splice sites
3' ss Seq
AATTTTATTTTTTGTTGCAGCAG
3' ss Score
8.16
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGCCGCCAGCCTCTGGCTTCTTCAGTGACTGTG
Seq A exon
CAGGAGTCTCTCATGTCTTCCTTGCCGTCCCTCAGCTCCGCCCCTAGAGACTGCACATTTTCTAAGAAGGCCCCCCAGGAAGGAGGAAGGCAATGGCTGTTAGGCCTCTGCCATTGGCAGCTCAG
Seq C2 exon
GAGTTACTGACATACAAAGATGTGTCTGAGGACTTCACTTGGGAGGAGTCAATGCAGCTATATTCTGCACAGAGGAACCTGAATGGCAGAGTGATGCTGGAGAACTGTAGCACCCTGGTCTCCCTGGGTGAGCACCCCCGCCTTCAGCCATCTGCCATATGGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049321_MULTIEX1-1/5=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTGGCTTCTTCAGTGAC
R:
TGTGTATTCCATATGGCAGATGGC
Band lengths:
195-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: