HsaEX1045039 @ hg38
Exon Skipping
Gene
ENSG00000256683 | ZNF350
Description
zinc finger protein 350 [Source:HGNC Symbol;Acc:HGNC:16656]
Coordinates
chr19:51964343-51968673:-
Coord C1 exon
chr19:51968578-51968673
Coord A exon
chr19:51967258-51967396
Coord C2 exon
chr19:51964343-51966214
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTTTTTTAAGACAGAGT
3' ss Score
1.35
5' ss Seq
AGAGTATGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
GGTATCAAGCCAGCAAACCGGATGCACTCTTCAAGTTGGAACAAGGAGAACAACTGTGGACAATTGAAGATGGAATCCACAGTGGAGCCTGTTCAG
Seq A exon
AGTCTTGCTCTGTGCCCAGGCTGGAGCGCAATGGTGTGAACTTGGCTCACCGCAACCTCCACCTCCTGGATTCAAGCGATTCTTGTGCCTATCCCCAACACCAGCACCATACCTGGCACACGGTGATCATTCAGTAAGA
Seq C2 exon
ACATATGGAAAGTTGATCATGTGCTGGAGCGCTTGCAGAGTGAAAGCCTGGTGAACAGAAGGAAACCATGTCATGAACATGATGCATTTGAAAATATTGTTCATTGCAGCAAAAGTCAGTTTCTGTTAGGGCAAAATCATGATATATTTGACTTACGTGGAAAAAGTTTGAAATCCAATTTAACTTTAGTTAACCAGAGCAAAGGCTATGAAATAAAGAACTCTGTTGAGTTTACTGGAAATGGGGACTCCTTTCTTCATGCTAACCATGAACGACTTCATACTGCAATTAAATTCCCTGCAAGTCAAAAACTCATCAGCACTAAGTCCCAATTCATCAGTCCCAAGCATCAGAAAACACGAAAATTAGAGAAGCATCATGTGTGCAGTGAATGTGGGAAAGCCTTCATCAAGAAGTCTTGGCTAACTGATCACCAGGTAATGCATACAGGAGAGAAACCCCACAGATGTAGTCTATGTGAGAAAGCCTTCTCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256683_MULTIEX1-2/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.115
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
ENST00000243644fB30708
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGATGCACTCTTCAAGTT
R:
TGGATTTCAAACTTTTTCCACGT
Band lengths:
257-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains