HsaEX1045041 @ hg38
Exon Skipping
Gene
ENSG00000269235 | ZNF350-AS1
Description
ZNF350 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:48598]
Coordinates
chr19:51949162-51976573:+
Coord C1 exon
chr19:51949162-51949235
Coord A exon
chr19:51971096-51971166
Coord C2 exon
chr19:51976391-51976573
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTGTCAATCTCTTGTCTCAGGAT
3' ss Score
8.29
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTCTGGGAACGGCTGGTTTCGCGGTCAGACGCCGAGGGCCCTCGAAGTCCCTAGCAACGGCTGCGGAGGGAGAT
Seq A exon
GATGCAGGATGGCTTTAAAGGATACTGCTGGTGGGAAATTGAGTCATTGAAGACCCAGGGAACAGCAGAAG
Seq C2 exon
TCCACCTAGGTCCGTGCAGGTTACAAATGGCAACCAGAACAGGGACTCCAAGCACGCCCAACTAGCAGCATCCAAACATGGGACTTCAAGGACGTGAATGAAGAAGGTCTGCTGGAGCAGAGGAACTGAAATTGACAAGGCGAAAGGGGACCCTGGGAAGAGTCTGCCGGCAGCAGATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000269235_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGGAACGGCTGGTTTC
R:
CACGTCCTTGAAGTCCCATGT
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains