HsaINT0186995 @ hg38
Intron Retention
Gene
ENSG00000256683 | ZNF350
Description
zinc finger protein 350 [Source:HGNC Symbol;Acc:HGNC:16656]
Coordinates
chr19:51969005-51974531:-
Coord C1 exon
chr19:51974346-51974531
Coord A exon
chr19:51969132-51974345
Coord C2 exon
chr19:51969005-51969131
Length
5214 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
AAACAGGACTGTTATTACAGGAA
3' ss Score
0.42
Exon sequences
Seq C1 exon
GTTCTGACTCCTCAGGAGCAAAAAACATAACCTGAAGAGGGAGGAAGTGGATTTGGGGTTCACCATTTCTTGGGGCACACTTGATTGAAAACTGAGACTTCTGAAGAGAAGGCCAGAAGATACAAAGACAGACCATCCCAGTTGAATGCTGTCTTCCAAGAACAGAAGAAAATGATCCAGGCCCAG
Seq A exon
GTAACTGACTTTTGGTTTGTTTTATTCTTTCCTTTGTTCCATAATAGATTTGTAGAAGCCTATAAACATCAATTTCACTAATATAAAAAGTATAAATTTCAAAAAGCAGGATCTGGAGAGAAGTAAGCTTAGTTTTTAAACTCAATATCATGCAAAATAGTAGGATAAGGAATATAATGTTCATAGCATTAACACTAAATTATGAATTTTGTGACACCATGCATGGCTGGAGGATCCTGTGGATTATATTAGCTGTCAGCTTGCATCTAATATCTCTGACAGCCAATGTCACAAGAAAATCATAATTTACATGGTATGTCCTGTTTTTGAAGATAAAACAGATTACTTCCTGGGGGTTGCCATTATTTCATGGCACTTTGGTCTCAGGAAATTTCTTCAGTGGTTCTTCCTAGAGTTGATGTGGTGGATGGTGTCCAGAATAGCAGCCTTCTCATAAATTCAGATGCAGGTTTCCTGTGGCTGTTTCTTGAAGGACTCCTTATATACTGTTACGGAATAGACTAAGCAAACAGTAAACACAGGGACCAACACAAGTTAATTTCAGCCTTGTGGCAGTCTGGATTTAACTTGGAATAAAACCTAGACATCCTGGGAATATGGCAGGATTCCAGGACTTTCAAATGGTTCTCAATGAACAGATAGCTGAACTGGTGTTTGAATATAGATTTGGAGACAGGGAGTTGAAAGTGATATTGTCTGAACAGGACTTGGATTGGAGTTTACAGATTTCCTTTAGACTTTCACCTTGTAGAAAATGCCAAGTCCTTATTGTATAGTAAATAATTGAACAAAGGGAGTTTTGGCCTTTGTGTTCAAGCTAATGGAGGGTGAGCTCTGGGCTTCTGGAATATCTTGCTAATGGTAGTGTCTTTGTTTGCTTGGGTCCTTTGGCCACTGGACAGCCTAAAAATACGAACTATGATAGATCTGTGATCTATGATAGGCCAGAAACTTCCAGAACTAGAGGCTAAAGTTAAAACCTGACTTCTGGGAGGGTGTGGACCTAAGATCAGCCACATAGGTCATCTGTGATTGTGTCCCAGTAAAGTAAGAAAGTACACATATCAAAAAATAAATTTCGGCTGGGCGCGGTGGCTCATGGCTGTAATCCAGCACTTTGGGAGACCGAGGTGGGTGGATCACGAGGTCTGGAGATCGAGACCATCCTGGCTCACACCGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTGGTCGGGTGTGGTGGCAGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGACGGAAATTGCAGTGAGCCGAAATGGTGCCACTGCACTCCAGCCTGGGTGACAGAGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAGTTTCTGGCTGAGTGCAGTGGCTTATGCCTACTTTGGGAGGCTTAGGCAGGAGGATTCCTTGAGCCCAGGAGTTTGAGACTAGCCTGGGCAATCTAGTGAGACCTTGTCTATATTTAGTAAAATTGAAGAAAAGAGAAAAAGTTTTCTTTTCACATATTTTCTTCCTAATCCACTTCTGTAAATGGTTGGTAATATTTACTTCCTGTCACTGTATCTGTTTGTGGATCTATGTCTATATATGTATTAATAAAAGTGTGAGTATATATGAATCTATCTGTAGATATATATATTCATTATGATATACACATATATATATTTTACATGATAGAATCATATTTCAAAGAACATAGCAGCCAACTTGAAGGGACTCTTCATTGGCCGAAGATGCTACACTTTGAACATCCAAAGACCAATGATTGCAAATGATTGAAGAACATTAATTATATAAAATTCCATCAGTTTATAGCTATACTTGAAAAAAATGCATTTGTCACCATTGGGGGTTAGGAGAGAATCAAGTATTTAATCTGAAAAATGATAAAAGATCATAAAGGTTTTGTGTGTGTGTGTGTGGCGGGGGTGGGTTGACTATGAGTTTATTTTTTACTTTTACTTTTCTGCTTTTTTTCTTTTTTCCTTTTTTTTTTTTTTTTAATTGAGATGGGGTCTTGTCATGTTGCCCAGGCTGCTCTTGAACTCCTGGGCTCAAGCAATCCTCCTGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCCATTGTGCCTGGCCCTCTTGGTAATTTTGTATTACTGACCCATACTCTGCTCCTTGGCTATAAATTCCCACTTGCTTATGCTGATATTTGGAGTTAAGTCCATTCACCCTCTACCACTGCAAAATCCCATTACATTTGTCTATATACCTGTCATAATGGCCCTGAATAAAGTCTTCCTTACTGTGCTTTAACAATTCTCATTGAATAATTTTTTTAAACATGTATAGCTTAATTAAGGAGGTGAGATTCCAACGCCTTTGCCATATTCTGAATAGAGGTAAGTCACTAGGCCAGTCCCTGCTCAAGGAGAGGGTGTAGAGCACCCAATTCTGTCCCTGTTTGGGCGCCACTTGTAACCCGCACAGACCTAGGGGGACTGAACACAGTGGGGTGAACACAGGAATAAAAGACAAGAGACAAAAGTATATTCGGAGGAAGGGGTCAGGGGGTACCTTGCCTCTAGTGGACAAGGGCCCTGAGCTTTACACAGCCCTCTGCATTTATTAGGCAAAAGAGATAGTTGGGGGGGTGCAGTGGAAGTAGGGGTCAGCTGCTCAGTCCAGAGGAGGCTTGCAAGACTACATTCTCTAAATGTTGCAGTAGATAACCTCAGCACCAGGGAGTGATTGCCTCCAGAAAACCTTCTGTCGGCAGGAGCAATGGTGAGTTTGCTCACATCCTGCATTCATGATAAACAGTTTGCTGTTTGATCATATAGCCTCCAGTGGAATGCTGAGTTGGTCACGTCCCACGGACCTTTGGCTCCCTGTAAGTGGGAACTACATAAAGGTGTGAACACTGGGAGGGTGGAGTTCATTGAGCCATCAAATCTGCCTGCCATAGATCTGTCATATAGTAAACTATTTTTGAGTGTGGATTGAGGTAAGACTTTCACTTTACTTTTTTCCAAATAGATAGCTATCTCACATAAATAATTTAGAATGGGTAAACCAACCAGGATTAAGTACTTGTATCATCTACCAAGTGTGTTCACTGGCCTCTGTAATAAAATGAGTATAGAGTGTACCTTCTGCTGTTCCCTGGGTCTTCAATGACTCAATTTCCCACCAGCAGTATCCTTTAAAGCCATCCTGCATCCTGAGACAAGAGATTGACAATTCATTGATAAGTAGTCTTAATTGTCACTATTACAGGGCTGTAGGTCCTTTGCCAGCCATGCCTTTCAGTCCTAAATGGTCTTCAAGGTTGGGCTGTGTTGTCCAAGAGCTGAGGACCTTACATTTATTGTTCCAATATTTATTGGCTATAATGATTTCTGTGGAGCAGTCAGCTGTCAGAAAATTTTGTCTCCTTTGTAGGTAACCTGTCATTGGTCTTTGGATTTTTTTATAGTCTCCCTTTGTATCTGGTGTAATTTAGTTTCAATCTGTTGTGCCTACGTGTAGACTTCTTGCTTGAAAAGTTGTTGGATTTCTTGAGTTTGAATTTTGGAGTGTTTAATCAGTTCTGAAAAATTTTCAGTGTTAGATCTTTGGATATTGTTTCTCCATTACTTGATTTTCTCCTTCTTCTTGAGAAATTATCAAACTCAAGGAGGTCATAGGAACCCTCAGTTTATAATTAGTCCATCAGAAAAATAGGAGGCCTGGATTTGTGATATATGGTTGGCCCTCCATATCCATGGCTTCCACATCCATGGATTCAACCAACTGAGGATTGAAAATATATATTTTTTAAGCATCTGAACTGAGCACATACAGACTTTTTTATTGTCATGATTCCCTAAACAATATAGTATAACAACTGTTAACATACCATTTACATTGTATTAGATATTATAAGTAATCTAAAGATAATTTAAAGTATATGGGGCTGGGCACGGTGGCTCACTCCTGTAACTCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCGTCTAAGGTCAGGAGTTTGAGAACAGCCTGGCCAACATAGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGTTGTGGTGGCGGGCACCTGTAATCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATTGTACCATTGCACTCCAGCCTGGGAAAGAGGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAATTAGCCAGGCGTAGTGTCACATGCCTGTAGTCCTAGCTACTTGGGAGGCTGGGGCAGAAGAATTGCCTGCTCCTGGGAGGCGGAGGTTGCAGTGAGCTGAGATTATGCCACTGCACCCCAGCCTGGGAAAGAGAGTGAGTCTCCATTTCAAAAAAACAGAAATGTATATGGGAGGATGTGCATGGGTTACATGCAAATCTGCAAGTACTATTCCATTTTATTTTATTTTATTAGAGACAGTCTTGCTCTGTTGCTTAGGCTGCAGTGCAGTAGCATGGTCATAACTCAGTGTAGTCTCTAACTCCTAGGCTCAAATGAGCCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACCACAGGCACTCACCACTGTGCCTAGCTAATTTTTTAATTTTTTGTACAGATGGGGTCTCATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCGAGTGACCCTCCTGCCTTGGCCTCCGAAAGTGCTGGGATTACAGGTGTGATCTACTGTGCCTGACCAATACTGTGCCATTTTATATCAGACACCTCAGTATCCTCAGGAGGTCCTGGAACCAATACCCTACAGATACTAAAGGATGGCTGTATATATGTCTTTCATTTGCATGTATCTAAAATAAATATATGTACATATATTCATATATATTTACATATATAAAATGTATAAATATATTGTTTTTAGGTTAGCAAGATTTAACTTCTACACTTTATAGAAACTTCCAATTGGGTGAATGGAGGATGACTGAATATACAGTTACAGAATATTATATTAGGACTTTACTTCTTCCACATTGTATTAAAAAAAAAACTATTTGGTATATGCACACAGCCTGTAGAGTGGAAATGAGCAGAAAAACTTTAGCATTTCTTCCACATCATCAAAAAGACATCACTTTATTAAACAGGACTGTTATTACAG
Seq C2 exon
GAATCCATAACACTGGAGGATGTGGCTGTGGACTTCACTTGGGAGGAGTGGCAACTCCTGGGCGCTGCTCAGAAGGACCTGTACCGGGATGTGATGTTGGAGAACTACAGCAACCTGGTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256683:ENST00000243644:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains