RnoINT0124822 @ rn6
Intron Retention
Gene
ENSRNOG00000001099 | Rbak
Description
RB-associated KRAB zinc finger [Source:RGD Symbol;Acc:1562875]
Coordinates
chr12:13430069-13438185:+
Coord C1 exon
chr12:13430069-13430083
Coord A exon
chr12:13430084-13438058
Coord C2 exon
chr12:13438059-13438185
Length
7975 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCTGATCGTGTCATTGCAGGGC
3' ss Score
6.99
Exon sequences
Seq C1 exon
ATGAGCATATCAAAG
Seq A exon
GTGAGTTTTTCCAGTTTGTAATTTTTTTTTTCTGACCCCTTTGTGATGTATTTTGGAAGACTTGCCCGGAGCTCTCTTCTTGAGAGTGGTAGTAGAGTGGTTCAGGACCATCTCTAAAGGGCTCTGATGACCTCTTCTGGCATGCAGGTGAACATGCAGCAGAGCAGTCATACATAAAATAAATATTAAATAAATAAGTAGAATGGTAGTGGAGGAAGGAGTATATAAAGGAGACTGTAATATAAAATACACCTGAGTGGCAGGCTGTCATGATCTCTTGTGTAGGCAGTCTGATAACTTTAGGCTAGTGGAGTTACTTGGCAGTGTTAGAAAAAGAATGAGTGGCGCTGGAGAGGTGGCTCAGCGGTTAAGAGCACGGACTGCTCTTCCAGAGGTCCTGAGTTCAATTTCCAGCAACCACGTGGTGGCTCACAACCATCTGTAATGGTATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAACGACAGTGTACTCACATACATAATAAATAAATAAAAATATCTTTTAAAAAAATTGCTATCCCATTACATCACCTGCAACAGCTACTGGGAGATGCCATTTTTGTTCCTTATGGGTAGTAAAGACTTCCTAGGACTTGGAGAATCTTTCATTATTCAAGTTGGTACGAATATGGATAACATATGGATAATCCTAATAGCAACATCTGAGTCCTGTATTCTCTTTGCTGGTTCTGTAAGCAGAGGCCCAAGCTCCCCGAGAACTTGTTGCATAACATTTTTTCAGAGACCAGAATGTCATGAGCCATCGCGATACATTTCTGTCTTTACTTTTTAAATCCCTGAAGTGAATTGTAGATCACATGTTAGTAGTTACTAGTTCGATCAACCTTTTAATAATGTTTCCTTCAGGGGGGCCATGCCCCGGCTGTTGTTCTTTCTTGGTTCTGTCTTGAAGCTGACAGGTAGAGCGTCGGTGGGGGCTAGATATTAAAAGTTGCTGTTTGCTAATAAAACGTTTGCCTATCTTAAATCTTAAATCTCAGTCCTTTGCTTCTGTAGCTGGCCTGCCTTTTGAGTTCCTCTTGGGTGAGAAACTGCAGTCTCTGTCATTTAGCACCTCATTGTAGAACAGCAGGGATTAGTAAAGGATGAGTTGCTAGATCCTTTTCCCTCTTATCCAGATGTCTCTTGCTTGTCAGGCTAGGGGGAGTGCACGGAGCAATAAACTTCTACCAGGAGAAGAGAATTATGCTCACAGAAGGAAAAACTTTTACACAAGCAAATATGGATTAAGCTCACATAAATTCATATACAGATTTATGTACACATATTCATAAATCTCCATTTAAACCAGTTGGGCCCAGCTTACATACTGTCTCAGAATTACATAGTTACACACACACACATATACATACATACATACATACATACATACATACATACATACATGACCAGTGCAGAAAGAACTCACTTATTCTGGATGAAAAATGAGTTCCAGTCTTTATTACATAGAGAAAGAAAAAGCTGGGGTTGGGGATTTAGCTCAGCGGTAGAGCACTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAGAAAAAAGAAAAAGCTTCTACCATTTTATTGCTACATGTTTAAACCTGTCTGTAAGAAAAGCTTTGTTCTCTTCAGTAAGACTAAGCCTGCCTTGTTGTTAAGAAAGGACCTGTTCTGCCCCATGCCTCTTTCCCTCTGCATTCTGCATATTGCTCTCTTTATTTGCCTTATAGTTTCTAAGTTATTCCACTCTTCATTCTCCTTCTAATCTTGCTCTCTCCTCCTGCTCTGTTGTAACAATGCTCTGCTCCCGATGCCTTACTCCCAGTGCTTTCTTTCCAATGTTGTATCCCCAGTGTGATCTTTCCCAGTCTTTTCTTCCTTTCCTAGGAGAATAGATCACATGGTTTTTCCAAGTATCCTTTTTTAAAAAAAAGTTCTTAGAAGTTCAAACATGAATTAAAATTATACATTGAACAAGAAGTTTACAACAGAGGATGTTTACACGCATATCCGTTAAGAATAGTTAGCTGGCTAAACAGTCATCGTGTATTACCAGTTCTACAGGTTCCTGGAGAGGTAAAAACCATAACTTTGGTGACTGAGTTATTATCGAAGTTTTGTACAGACAAACCCGGTCAGTATTTTATCTTCTGTCCTTGCACCTGTAGTAAATCCTTAGCTCCCCTTTTATGACCTCTGGTTAATGGGTTTACAGCATCTTGTCATGTGCTCTTGGGTTGTAGATGCCCCCTGGCTGTCTCAGAAGCAATTGACTGGGGATGCTTGAAGACCGGCAGGGTTCTCTTTGCAGCCTTGATTGTCAGAGAGGACTTAGTAGCGGTCCTATTATAAAAGAGCTTAGTAATTACTAGTATAATTTTAGGAATTCTTACAGGATTTTCACGAAGACTTAAGAAGCCATCTGTTTGTCTACATAGCATCACCACAAGACAGTACGTCTTCATTGTCCTGCAGAAATCTGCTCAAAAGGGCGGACTAACACCTAGTGATTGTTGTACATATATATTTAATAATAACAGGGAAAGCATAGTAATAGGAAGAATCCTAAAATGGATTTCTCCTCGGCCTTGCCTAAAGGAGGAAATCCATCTTAGATTTTAATCCGTGGTGGATTGAATCTTAGGAAGATCGCCTGCTAGCTTTCAGCTTCTCCTAGGTGGCTCCTGGCTGGTTCCCCTAGTATGCCTCCTATGGTTTGAATTTTTTTCTGCTTCTTTTCTTTCTCTCTTTCTTTCTTTCTTCCTTCCTTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTAAGAAACTGGGCTATTTATTTGTTGTTTCAAAGTTTGGAGTCTGTCCCTACTGTCTTACCTTTAATTTTTGAAATCCCTTGCGCACCCCGTGAGATTGGTGGTTTTCACAGAAAGATTAATTAGATCGTGTCCATTCATTTTAGGGGTTGAGACAGGAGTTCGTGTAGCTTAGGCTGGCCTCCAGAATGCTACTGTAGCCTGAGAATGACCTTGATGCTGATGACAGATGTGCACCTCTGTCCCTGGCCTGTCCATTCTTTTAGCAAGTCTGTTGTCTTAGTTACTTTTCTGTTTGCATGTTGGAAGTTCCATAATACACAGTCCATCCTGGCAGGAAAGGCAGCAGAAGCTTAATTTAAGGAAGCCGATACTTTATCTATTTTCTGAAGTCAGGAAGGGAAGAGGAAATAGATAGAGGAAAGAGGCTCCCTTTGTGTCAGTAGTCCAGGATCCCAGCCAGGGAATGGGGCCACCCACAGCCATTGGATTTTCCCACTCAGCTCATGTAATGGAGACAGCCCAGTAGGCCCACCTCCCAGGTGACTGCGGTCTATCAGATTGACAACACCCGCACCACAGTAGTTACACATGTTCCTGTTTGTCATTGTGAGATTATCATCTACGAAGTGATGGCGTTTGTCACAAAGTCCTTAGGGAAGGTGGAATGGTAGGCCACTCTAAGTACCATCTCTACTTCCGGTACAAGCTAGAATACTGTGCGAGAGTAGACTCCCTCCCTGGGCCACACAGCTCTGTAAGACGACAGACAGTTTAGAGCGACCACGTGAGCAGCATGTTTCTCATTCGTTGCTGTCCTGAGTCTACGGATTTAAAATGTTTCCAGTGTCTCAGCACATCTTGTGATTGGCCTTGATATTTAAACCTTTGGAGTTTGGAGGCCAGGTAATCGCTTTAAGTTGGTTCTTGAGATCTTCGTAAACATGTCTTAAACATTTGAACACTGAACATTTTATTGTGAAGTAATTTCAGATTCATAGAAAAGTTACAGAGAAACAAAAGAATTATACAAAGAAATCTTTTGTTCCGTTTGCTCTCATGTACCGTTTTTAAACAGTTTTTTTAAAAAATTTGTCTTGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCAGTTCCCAGCTCCGAAAAAAAAAGAACCAAAAAAAAAATTGTCTTGGATGTGCCTACATGTGTGCATGTGTGGGGACCAGTATGTACCATATATGCACATGAAGGTCAGAGCACAGCCTGTGGGAGTGAGTTCTCTCCCTTCATACGGATCCTGGGGACAGAGCTCAGATTGTCAGGCTGTGTGGCAAGTGCTTTTACCCACTGAGCCATTTCTCTAGCCCAACCATGCCAGAATGGCTTCTGAAATAACAGGCCATGTGCACTGTATAGCACCAGATGTAATAAAAAACCATGGCACAGTGACAGAGTGCTCACTTAATCTAGAGGACATTACACGTACTTGATCTTGCTTAGCATTGCTTTTGGCAGATCCAACGGGAAGACTCTTAGCCATAGAATCATGGAGTCATACATAGAATCATAGTCTCATACATAGAATATAGAGTTTCATACATTCAATCATAGACTCTCATGCATAGAATCATAGAGTTTCATACATGCAATCATAAAGTCTTGTACATAGAACCCTAAAACCTGAACTCTGTGGGCACTAGGCGTGCATTTAATACACAGACATACACGCAGGCAAAACACCATTCGTATGTCAGAAATCACGGTCCTCTGTCATGTATCAATTTAGTTTTTTGAGGTTGAGTGTTTGTCTTGATGCTTGTCTTTTTTTTTTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTACGCTTGCTAAGCAAGCGCTCTACCAACTGAGCTAAACCCCCAACCCCAGATGCTTGTCTTTTTGTTTATACTATATTTTAGCTGATGATCCTTAATGTTCTGTTTACATTTAGAGGACAATTTTCCTTCTTTAGGATGCTGGAGATAGAATTTGGTGTCTCCACTGTAGGCAAAGAAAGATCGATCATTAGCAGCTAATTCGGATGTGCTCCCGTCATACGTGAGCGTGAGGAGACAGCTGTAGAAGCTGGAAGTGCCGAATGGCTTCCCTGCTGCCGAGGCATGGCCTAGAGAGATGACTCAGCAGTTAATACTTACTGCTTTTCCAGAGGGTACAGGGTTGATCCCAGCACCCACATGGTGACTGACAGCCACCCGTAACCCCAGTTAGCCGGTACTGTCTTCTGGCCATAGGCACTGTGCACATGTGCACATTCTTACATACATACATACATACATACATACATACATACATACTACATGGAAAACGTTCATACAATAGTGACATCTTAAAAACAATATTCAAATTGCCAAATTTGGTCATGCCTTAAAGGTGCATGCCTTTAATCCCAACATTTAGGAGGCAGAGGCAGGCAGACTTCTGTGAGTTCAAGGCCAGCCTGATCTACAAATGAGTTCCAGGACAGCCAATGCTGTTACACAAAGAAACCCTGTATTGAAAAACAAAGAAGGGGTTGGGGATTTAGCTAAGTGGTAGAGCACTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCTCAGCTCCGGAAAAAAAAAAGAAAAACAAAGAGACAAACAAACAAAAACCATAACAACAAAAACCCTCCGATGAAAGCAGTTTAAGAGAGAGAGGTTTGTTTTAGCTCCATCACAAGGCAGTCAGCAACAGACTCTTGAAGTGGCTGGTCACATTACATCCCCAGTCAAAGAGCTGGAAGCAACAAGTGCTTGGCCCGCCTTGTATTTGTATAGTCCAAGATCTAAGCCAAGGGAATGAGCCGCACACGGTGGGCCGACTTTCCTGCTCCACGTAACTTCATCAAGATAATCCCCTGTAAGAATGAGTAGCCCTTGGCCTGTCTCTCCAGTATTCAGGGCCTCATCTTATTGATCACAGAGATAAACACCTAATTAAATAGGCATTGAGTCATTTTGTAGAGGTGGTGAGTTTTGCCCAACTTAGGGAAACAAAAGCCGTCCAATGTGGATAGAGTTGAGTGAATGTCCTGGTTGAATTTGAATTTGATCTATATTCCTGATAATCCCATACAGATAGTCATTTATTTCATACAGAAATTTTCCCTTTGAACAGTGCGTGTATGATCTTATCACATGGCTGTCCGGGGGTCCTGTGCTTTACTCTCCAGTGACCAGTTGCTCCTTGGTAGCCATGAGGCCCTGAGGGAACTCTGCAAGGACTCTGCTGGAGAGTCTGCTGTTTGTTTTGACTGCAGACCAGTAGCCTCTATATAAAGTTGTATGACCCAAGGTTGTGGTTTCTCTTGTCCACAACTCTTCTCTGTACCTAAAAGACACCACTGAGAAATTCCTATGGCTGGGACCTCCCTTCCACTGCGCTTAGAAGAATGAAATGTGGTCTTCTGTTTCTTTTTTTTTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAATCCCCAACCCCCTTCTGTTTCTTTTTTAAAAATATATATTTATTATTTATGTTGATATTTGTGTGCCTGTGTAAGCTTATGTGCACCATGTGCATGCAGAAGCTTACAGAAGCCAGGAGAGGGAGCCAGAGTCTAGAACTGGAGTTACCAGGCAGTTGTGAGCTGCCAAACAGGGTGCTGGGAACTGAACTCAGGTCCTCTGCAAGAGCAATGAGCACTTACTGAGCCATCACGGTAGTCCCTGGACTTCGGTTTTTGAATCAGGAAGATAATCATGTGTTTACTCCTAATTTAAAATTGGCCCTCACTGTCAAAAGCTGCCCATAGGAAAGTGCCCTCTTGGTGGCTTTCCACCTACCTTTCTGCCCGACCTCTACGTCCTGGTGCCTGCCTGTTTATCCTTTTTCTTAGCCCCCACCTTTCCTTGTATATTTTATTCTGGTAATACCTTTTGGCTTTGATTCTGTTGTCTTTTTTTTTTAATGTTACAAAATGGTGTAAGAAAGAAATGTTTGCAGTGACATTTCAAATGCTGAAATCTGGGCTGACAAGATGACTCAGTGAGGAAAGGCCCTCTTGACACCACACCTGATAACTTGAGTTTGATCCCCTAAACCCACACAGTGGAAGGAGAGAACTGCCTGCCGAGCTTTCCTCTGAGCCCCACATATTTGGTGCCACACATTTGCTAAAATCCATTTCTTAAAATCCAAAGCGGGGCAAAAACAGCGGGACAATGGGAAGAAGAGAAGCAGGGCTGAGTTGGGAGGGTTCCATTATGAAGGGACTCAGGACTGCCAGCAAAGGAGACTAAAGGCGGTGACAGGATAATGGGATGCATATGTCTGTTATATGTGTGACTGTCTCCTCCTTGGTCTCGCAGGCTCTGAGAGCAGAAACGCTGTTTTGCATATCTTACAGTCATAATCCAGTTGAAAACTGGGAACTCCACTGTTGTGTCTCTGTTTCATTTCCTGTAGCTGTGATTAAAAACCCCTGAGAGAAGCAACTTAAAGGAGAAGGGTTTGTTTAGCTCATGATCCCAGGTTATGATCCATAACTCTGTGGATATCAGGTGCAAAAATGTTAAGCAGTTGGTCACATTACAGCTAATGTGAAGAGCAAAGAGCACTGAATTCATGAGTGCTTAGTAGCACTCAGCTTGCTTTCTCCACTCTTAAATAATGCAGGATCTCTGTCCAGGGAATGATGCCGCCCACAGTGGGCGGGTCTTCCCACTTGAGATAACTTAAGAAACACTGTGCCACAGGCCAACCTGGTTAGACAATTCTATTGCACCTCCTTTTCCCAGATGAGTCTAGATTATGTCAAGTTGACAGTTAACTGTCACGTCAGAGTTTTGGTTTTGTTTCCCAAGATGACATGTTTACAATATGATGTTGAGATTTCCTGCAGCAATATAGTTTGTTTTCCTCCCGGGCTCTGTAACATAAAATAAGGTACACAGCACTCATGGTTAACTGTACCAGTAGCTTGAGAAACACTTGTTCTCCCCGTGCATTTTATAAATGTCCTCATTCTGATCGTGTCATTGCAG
Seq C2 exon
GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACTCTGAGGAGAGGACGACCTACCGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001099:ENSRNOT00000001455:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.134
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]