HsaEX1045273 @ hg38
Exon Skipping
Gene
ENSG00000018869 | ZNF582
Description
zinc finger protein 582 [Source:HGNC Symbol;Acc:HGNC:26421]
Coordinates
chr19:56375846-56390096:-
Coord C1 exon
chr19:56390001-56390096
Coord A exon
chr19:56384223-56385184
Coord C2 exon
chr19:56375846-56376121
Length
962 bp
Sequences
Splice sites
3' ss Seq
TCGCTTTTTTTCATTCTTAGTAT
3' ss Score
7.79
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCTTGCCGTTTCCAAACCTGATGTGATCTCCTTCCTAGAGCAAGGCAAAGAGCCCTGGATGGTGGAGAGAGTGGTGTCTGGAGGCCTGTGTCCAG
Seq A exon
TATTGGAGTCCAGATATGATACCAAGGAATTATTTCCAAAGCAGCATGTTTATGAAGTCGAATCACCCCAATGGGAGATAATGGAAAGCCTTACAAGTTATGGTCTTGAGTGTTCAAGTTTCCAAGATGATTGGGAATGCAGAAACCAGTTTGACAGACAACAGGGAAATCCAGACAGACATTTCCATCAGATGATCATCAGACATGAAGAAATGCCCACTTTTGACCAGCATGCATCCCTTACTTTTTATCAGAAAATTCATACTAGAGAAAAACCTTTTGGGTATAATAAATGTAGAAAAGACTTCTGGCAAAAGGAACTCCTTATTAATCATCAAGGAATTTATACTAATGAGAAACCCTATAAATGTAAGGAATGTGGGAAGGCCTTTAAATATGGCTCACGACTAATTCAACATGAGAATATTCATTCTGGTAAGAAACCATATGAATGTAAGGAATGTGGAAAGGCCTTCAATTCTGGTTCAAATTTTATACAACATCAGAGAGTTCATACTGGTGAGAAACCGTATGAATGTAAAGATTGTGAGAAGGCCTTTAGTCGAAGCTCACAGTTGATTGAACATCAGCGAACTCACACAGGCGAGAAACCCTATCAGTGTAAGGAATGTGGCAAGGCCTTCAATCGGATCTCACATCTTAAAGTACATTATAGAATTCATACTGGTGAAAAACCCTATGCATGCAAGGAATGTGGGAAAACCTTTAGTCATCGTTCTCAGTTGATTCAACATCAGACTGTTCATACTGGCAGGAAACTCTATGAATGTAAGGAATGTGGGAAGGCTTTTAATCAAGGCTCAACTCTTATACGACATCAGAGAATTCATACCGGTGAGAAACCCTATGAGTGCAAAGTATGTGGAAAGGCCTTTAGAGTGAGCTCACAACTCAAGCAACATCAGAGAATTCACACTGGAGAGAAACCCTACCAATGTAAG
Seq C2 exon
GAGCTAAAGGGCAGAGGGGCAGAGATGCTGGCTGTGCTTGCTGTAAAAGAACAGAACAGAACCCCGGTCAATTATGGAAAATGACTGAGTCTGGCCTGTTTTTCATGCACTAAACATGTGGGAATCCCACTGTTTTTTCCAGATTATACTGTGTATGTAGACAGTGGAGAGGGCTAACCTCATTAAGGGTGCAAGAGGGGCTGGTTTTACAGGGGGCCTCTACTACGAAGGCCTAATGGTTTTGAAAATGAACTCAAATAAAAGATTATTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018869_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=0.113
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=PU(89.5=5.3)
C2:
PF134651=zf-H2C2_2=PD(0.1=0.0)
Main Inclusion Isoform:
ENST00000589143fB30835
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGCCGTTTCCAAACCTG
R:
TTCAAAACCATTAGGCCTTCGT
Band lengths:
342-1304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains