HsaINT1000718 @ hg38
Intron Retention
Gene
ENSG00000267192 | AC006116.12
Description
NA
Coordinates
chr19:56387412-56388424:+
Coord C1 exon
chr19:56387412-56387698
Coord A exon
chr19:56387699-56388259
Coord C2 exon
chr19:56388260-56388424
Length
561 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
TGGGTAATAATCTGTTACAGGAT
3' ss Score
6.06
Exon sequences
Seq C1 exon
CACATTTATTGTAATCAACAGTAACTGGATGTTTCTGAGGTGTTTTGATTGGACTCAAAAGTATTACAATCAGTTTGGAGACAAAAACACAATCTGCATTTTAGTTTAAGTATGACACTGATGACTTAAAAAAAAACTATATACAAACGTTCTATATAAAGTTTGCCTCCAAAGTATTTCTCTTTCTCTTTCTTTTTTGCAGGGGAGATGGGGTCTCATTCTGTTGCCCAGGCTGGAGTGCAGAGGCACAATCATATTATACTACAACCTCAAACTCCTAGGCTCAG
Seq A exon
GTGATTCTCCTCTGTCAGCCTTCTGAGTAGCTGGGACTACAGGCATGAGTTATTACGCCTGGCTGCAGAGGGATTTTAATATGTAAAAGTATTAACACAGTGTATTAACTTTGTGCCCACGCAAATCTCTTTTCTATCACATCCTTATGTTCTTCGACAGATTGACTTTTATGCTTCTCCTTTTAGAAACATAAAATTGTTTTATTCTTAGTTTTAAAAAACATTTGAATGTGTACCCTTGCTTATGCGAAGATTTATGACCTACTAGTCATAGCTAAATAGTCAACATTGTAAGAGCTGATACTTTTTGGTTCATGTGAGGTTTGGCATTCTTGCATTTATGTACACGGATGTCAATTGTGTGGACTTCTTCTGTATTTATGTTAACTAGCTTTTACTGAATTGTTGAAACTAAAAAAGTTAAAAACGTGCTTATAAAAAAAGGGGGGGGGGATTATGTCCAAAGAACCCAGGAGCCAGTTTGAAAGGGTGTCACTGGGCAAGTCTGGAAAACTATGAACGTTGTGATAAATAATGATAATGGGTAATAATCTGTTACAG
Seq C2 exon
GATAAAACAAGATTTATTTTATTCTGACCTGGAAATGAGAAAAAATATGCCACCTACTATTAATCCATATGATATAAATGAAGAAACAAATGGTGAAAGGGAGAAAGCTCTTCTTTACAGGAGTATGTGATCTAATAAATAAGAATAAAGTTTTTTTAAAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267192:ENST00000589671:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGTGTTTTGATTGGACTCA
R:
TCTCCCTTTCACCATTTGTTTCT
Band lengths:
358-919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains