HsaINT0187744 @ hg38
Intron Retention
Gene
ENSG00000018869 | ZNF582
Description
zinc finger protein 582 [Source:HGNC Symbol;Acc:HGNC:26421]
Coordinates
chr19:56383770-56390096:-
Coord C1 exon
chr19:56390001-56390096
Coord A exon
chr19:56385185-56390000
Coord C2 exon
chr19:56383770-56385184
Length
4816 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCGCTTTTTTTCATTCTTAGTAT
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTCTTGCCGTTTCCAAACCTGATGTGATCTCCTTCCTAGAGCAAGGCAAAGAGCCCTGGATGGTGGAGAGAGTGGTGTCTGGAGGCCTGTGTCCAG
Seq A exon
GTGAGTGAGGTATCATTGGGAAGGGAGCAGCCACTGCAGGTATCAGGTCCGCTGGAAGTGGCCCTTTGTCTTAGAAGATCTTCCCTGCAGGTTGCTACCTTCAAAGCTTATGTCTTACGTGTTGTTTTCCTCAGCTCGTCAGCAGCATTTGACAAAGGTGGCTGCTCCTTCCTCCTGAAACACTTTAAAAATTCAACCTGGATTATAGGGCTAGACTGAGTACAAATATGGTGGTTCCTAAGGAAAGTATTTTGTCTTTGGAAAGATGTCTGTATCTTTTGACCATTTTTCTTTTTTTATTAATTTTAATTTTAATATTTAAAATTTTTTTTAACTTCAGGAGTATAAGTGCAGGTTTGTTAAATAGGTAAACTTGTGTCATGGGGGTTTGTTTACAGATTATTTCATCACCCAGGTATTAAGCCTAGTACTCATTAGTTACTGTTCCTGATTCTCTCCCTCCGCCCAACCTTCCATTCTCTGAAAGGCCCATGTGTGTTGTCCCGCTCTGTGTGTCCATGTGTCCTCATTTAGCTCCCACTTATAAGTGAGAACATGCAGTATTTGGTTTTCCGTTCCTGTGTTAGTTTGCTTAGGATAATGGCTTCCAGCTCCATCCATGTCCCTGCAAAGGACATGATCTTGTCCTTTGACCATTTTTCTAAAGGAATTTGTATCGGTTTGTTTGAATTCTGGAGTCAGTTAACAAGTACTTATTAAGCTTTTATTATGCACCATGGAATATGCCACAGTATACATTGATGAGGCAGGTGGACATTATCCTTGCTTTCATGGAACTTACACTGCAGTGGGAAAATAGACATGAAATCATACACACTGGACATGAGCTAATATGTGAAAGAAAAAGAACAGGTTCAGTCAGGGTGCATGGTAGGGCCAATGGCCTCTTCAAGGATAAGGCATTTCAGCTGAGACATGGAAGGTGTGATGTAGCTGGGGAATACCAGTTGTAGCCAATGAGTGTGAAGGACCTGAGCAGGGAGCCCTTGGTACCTCTGAGATAATGGATGGCCCTTGTGGCTGAGGTCAGTGAGCAAAGGGAGGAACACAGAGATACACTAGGGGCCGGGCATGGTGGCTCATGCTTATAATCCCAGCACTTTGGGAGGCTGAGGCGGCCAAATCACTTGACCAGTCTGGCCAACATGGTGAAACCTCGTCCCGACTAAAATCACAAAAATTAGCCGGGTGTGGTGGCACGTGCCTATAATCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATCGCTTGAACACGGGAGGCGGAGATTGCAGTGATCCGAGATCGAACCACTGCGCTCCAGCTGGGGCAACAGAGAGAGACTCTGTCTCAAAAAGAAAAAAAAAGATACGCTAGGAAAGGCAACCACGTTATGAAGTTTGGGTTCTGCACTGTGGGCAGAGGGAAAGCACTGTAGAAATAGAGGCAAGCCATGATTTTATGGTCCACCTGGAGAGGATATAAATATTGTGCTTCTCACAAATTATTCACCTGCTAGTTTCAGAAGTCATTGATAGTTTTCTCTTGGATCAGATATGATTAATAGTTACAAAATAGTGATTTTTAAAAAAACTTTATTCTTATTTATTAGATCACATACTCCTGTAAAGAAGAGCTTTCTCCCTTTCACCATTTGTTTCTTCATTTATATCATATGGATTAATAGTAGGTGGCATATTTTTTCTCATTTCCAGGTCAGAATAAAATAAATCTTGTTTTATCCTGTAACAGATTATTACCCATTATCATTATTTATCACAACGTTCATAGTTTTCCAGACTTGCCCAGTGACACCCTTTCAAACTGGCTCCTGGGTTCTTTGGACATAATCCCCCCCCCCTTTTTTTATAAGCACGTTTTTAACTTTTTTAGTTTCAACAATTCAGTAAAAGCTAGTTAACATAAATACAGAAGAAGTCCACACAATTGACATCCGTGTACATAAATGCAAGAATGCCAAACCTCACATGAACCAAAAAGTATCAGCTCTTACAATGTTGACTATTTAGCTATGACTAGTAGGTCATAAATCTTCGCATAAGCAAGGGTACACATTCAAATGTTTTTTAAAACTAAGAATAAAACAATTTTATGTTTCTAAAAGGAGAAGCATAAAAGTCAATCTGTCGAAGAACATAAGGATGTGATAGAAAAGAGATTTGCGTGGGCACAAAGTTAATACACTGTGTTAATACTTTTACATATTAAAATCCCTCTGCAGCCAGGCGTAATAACTCATGCCTGTAGTCCCAGCTACTCAGAAGGCTGACAGAGGAGAATCACCTGAGCCTAGGAGTTTGAGGTTGTAGTATAATATGATTGTGCCTCTGCACTCCAGCCTGGGCAACAGAATGAGACCCCATCTCCCCTGCAAAAAAGAAAGAGAAAGAGAAATACTTTGGAGGCAAACTTTATATAGAACGTTTGTATATAGTTTTTTTTTAAGTCATCAGTGTCATACTTAAACTAAAATGCAGATTGTGTTTTTGTCTCCAAACTGATTGTAATACTTTTGAGTCCAATCAAAACACCTCAGAAACATCCAGTTACTGTTGATTACAATAAATGTGACATGCTGACAGAATTTAAGAAGGTACAGTTTTTCACTGGTGAGAGCAGTAAAAGCTTGGTAATTTTCAATAATGTTGGGATCACTACAGTGAATAGATCTGCAGAACAACATATCTAAAACCCAGACAAATGTTAGGAATACTGGTTCTGTTGAATAAATGACCAATGTTTTTATAGAAATACGTAACATAGAATTCCCTCCTGCTCTTTCACCCTCAATAAATGCTATAAAGTGCATTCACAAAGAGCCATATTAAGATAAAGCTACTGCACAAAATACAGCACTCATATATACTGAAATGAGTAGTATCACACTGGAGTTTAATTGTGCACATTTTATATACCAGTATAGCAACATCCTTAGCCAGAAGTCTCAACAGAATTATCATGAACATAAACGTTTAAGGGTTATATACATATATCAATTTAAAGTATGAAAAGGTGCATTTGAACTTCATGGCAACATTTAAAAATGATATCCTTGTTAGCACATCACCTTGAATCTATGATGTATGATTCAGCAAATTAGGACAGAATCAAATTCTCAGCAAAAAGTACTTTGAGGCTGGGGATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAATATGGCGAAACCCCATCTTTACAAAAAAGCACAAAAATTAGCTGAGCATGGTGGTGCCCACCTGTAGTCAAGCTATATCTGAGTCTCTTTAAGTCAACTGGGGTTGGTTGCTATAAGTACAGTAAAACCTGCCACTGTAGCTGAAATAATGTACCAGGTAGAATCACAGTCCATTATAGCATTCAGCTTTTTCATGCAGTTTGAATAATCAGCAAAGTATGTTGCTCTAGAAGGACCCACCCTCAATCAACTGGCCTAATCCTCTAAACAAGGAAAAAAGCCCTTCTTTTTCCAAGGTCACCTTTAAGAAATGAAAAGGTTCAGGTAAATGCATGACATTTAAGAAATTTAAGAAATGTCATTCAGTTGATAATGGGCTTCAGCCATGGCGTTCAACTAAACTTCAGATATAAAAAACACCATGGTGTTCAGCTAAACTTCAGATATAAAAAGCTTCACAGAGGAAGACAGCAGCCATGTCATTCTAACTTCTAGCGGACACATGAGAATAGCTGCCACTGTACCAGCATATTCCTCTGGTTCATTCTCCTGCATGTCCTCCAGGCACTGAGGCAGGTTGCAGATCCAACCACACACTTCCAACACCACTTTTATTTTTATTTTTTAAAACTGTGGTAAAATACAAGATTTACCGTGCTCACCATTTTCAAGTGTACAGTTCAGTAGTGTTAAGTACATTCACACTGTTGTACAACCATCATCACCGTCCATCTCCGGAACTCTTTTCATCTTGAAATCCCCATCATCTTTTTAAAATTCACTCTTTTGGGGGCATAATTTATGGTCAATAAAATGCATTTTTAAAATGTGCTATTAATGAGTGTTGACAAATTTATACACCCACATAACCATCACCTCAATCAAGATAGCGAACATTTCCATCAACCCAAAAAGTTCCCTTGTGCTCCCTCCTGCACAGTCCGTCAAACCAATGATTTGCTTTGGTTTCTGTCACTCTATATTTGTCTTTTCTAGAGTCTCACAGAAACATTTACTGTCTTAAAAAATATTGTTCAATAGTGATTCTGACCCACACCAACTCTTTTTTTTTTTTTTTTAAAGTCTCCCTCTGTCACCCAAGTTGGAGTGCATTGGCGTGATCATAGCTCTCTACAGCCTCTAACTCCTGGGCTTAAGCAGTCTTCTTTTCTCAGCTGGGACTACAGGCATGTGCCACTGCAGCTGGCTAATTTTTAAAAATTATTTTGTAGACATGGGGTCTTGCTGTGTTGCTGAAGCTGGTCTCAAACTCCTGGCCTCAAGTGATTCTCCCTTCTTGGCTTCCCAAAGCACTGGGATTACAGGCATGAGCCACCATGCCCAGCCCCACACTAACATTTTAGAATCACTTTTATAACCTCTCTTATTGCCTCCCTCATCTCATGTATGTTATTTTCCTTTCACTGTTCTACTTGTCCATTTTATAATTGCTTAGCTACATTCAAGAGTTAATAGGCATTGAGTCTAAACCCTCCAGTTCTTATTTTAGTTCCTTTATCTGGAAAAAAAAAGAAGCCAAACATATTCGCTTTTTTTCATTCTTAG
Seq C2 exon
TATTGGAGTCCAGATATGATACCAAGGAATTATTTCCAAAGCAGCATGTTTATGAAGTCGAATCACCCCAATGGGAGATAATGGAAAGCCTTACAAGTTATGGTCTTGAGTGTTCAAGTTTCCAAGATGATTGGGAATGCAGAAACCAGTTTGACAGACAACAGGGAAATCCAGACAGACATTTCCATCAGATGATCATCAGACATGAAGAAATGCCCACTTTTGACCAGCATGCATCCCTTACTTTTTATCAGAAAATTCATACTAGAGAAAAACCTTTTGGGTATAATAAATGTAGAAAAGACTTCTGGCAAAAGGAACTCCTTATTAATCATCAAGGAATTTATACTAATGAGAAACCCTATAAATGTAAGGAATGTGGGAAGGCCTTTAAATATGGCTCACGACTAATTCAACATGAGAATATTCATTCTGGTAAGAAACCATATGAATGTAAGGAATGTGGAAAGGCCTTCAATTCTGGTTCAAATTTTATACAACATCAGAGAGTTCATACTGGTGAGAAACCGTATGAATGTAAAGATTGTGAGAAGGCCTTTAGTCGAAGCTCACAGTTGATTGAACATCAGCGAACTCACACAGGCGAGAAACCCTATCAGTGTAAGGAATGTGGCAAGGCCTTCAATCGGATCTCACATCTTAAAGTACATTATAGAATTCATACTGGTGAAAAACCCTATGCATGCAAGGAATGTGGGAAAACCTTTAGTCATCGTTCTCAGTTGATTCAACATCAGACTGTTCATACTGGCAGGAAACTCTATGAATGTAAGGAATGTGGGAAGGCTTTTAATCAAGGCTCAACTCTTATACGACATCAGAGAATTCATACCGGTGAGAAACCCTATGAGTGCAAAGTATGTGGAAAGGCCTTTAGAGTGAGCTCACAACTCAAGCAACATCAGAGAATTCACACTGGAGAGAAACCCTACCAATGTAAGGTATGTGGTAGGGCCTTCAAACGGGTCTCACATCTTACTGTACATTACAGAATTCATACAGGTGAAAAGCCATATGAATGTAAGGAATGTGGGAAGGCTTTTAGTCATTGCTCACAATTGATTCATCATCAGGTTATTCACACTGAGAAAAAGCCCTATGAATATAAGGAATGTGAGAAGACCTTGAGTCATGATTCAACTACCGTTCAACCTCAGAGAATGCATAATAGAGAAACACATGTGAATATAATAAATGTAGAAAAGCCTTCCATCAGCAGTTACCCCTTACTAATCATCAGAGAATTTATGTTGGCAAGCAACCATATGAATGGAAGTAATGGGGAAAGCCCATTAGCCTAGGCTAATTGTGACTGTGACTTACTTCTCCCTCTTGGAGAAAGACTTGAAGAATGTAATGCCAGTGACAATGCCTTCATTCAGAGGTAAGCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018869:ENST00000586929:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains