HsaINT0187744 @ hg19
Intron Retention
Gene
ENSG00000018869 | ZNF582
Description
zinc finger protein 582 [Source:HGNC Symbol;Acc:26421]
Coordinates
chr19:56894648-56901465:-
Coord C1 exon
chr19:56901370-56901465
Coord A exon
chr19:56896554-56901369
Coord C2 exon
chr19:56894648-56896553
Length
4816 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCGCTTTTTTTCATTCTTAGTAT
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTCTTGCCGTTTCCAAACCTGATGTGATCTCCTTCCTAGAGCAAGGCAAAGAGCCCTGGATGGTGGAGAGAGTGGTGTCTGGAGGCCTGTGTCCAG
Seq A exon
GTGAGTGAGGTATCATTGGGAAGGGAGCAGCCACTGCAGGTATCAGGTCCGCTGGAAGTGGCCCTTTGTCTTAGAAGATCTTCCCTGCAGGTTGCTACCTTCAAAGCTTATGTCTTACGTGTTGTTTTCCTCAGCTCGTCAGCAGCATTTGACAAAGGTGGCTGCTCCTTCCTCCTGAAACACTTTAAAAATTCAACCTGGATTATAGGGCTAGACTGAGTACAAATATGGTGGTTCCTAAGGAAAGTATTTTGTCTTTGGAAAGATGTCTGTATCTTTTGACCATTTTTCTTTTTTTATTAATTTTAATTTTAATATTTAAAATTTTTTTTAACTTCAGGAGTATAAGTGCAGGTTTGTTAAATAGGTAAACTTGTGTCATGGGGGTTTGTTTACAGATTATTTCATCACCCAGGTATTAAGCCTAGTACTCATTAGTTACTGTTCCTGATTCTCTCCCTCCGCCCAACCTTCCATTCTCTGAAAGGCCCATGTGTGTTGTCCCGCTCTGTGTGTCCATGTGTCCTCATTTAGCTCCCACTTATAAGTGAGAACATGCAGTATTTGGTTTTCCGTTCCTGTGTTAGTTTGCTTAGGATAATGGCTTCCAGCTCCATCCATGTCCCTGCAAAGGACATGATCTTGTCCTTTGACCATTTTTCTAAAGGAATTTGTATCGGTTTGTTTGAATTCTGGAGTCAGTTAACAAGTACTTATTAAGCTTTTATTATGCACCATGGAATATGCCACAGTATACATTGATGAGGCAGGTGGACATTATCCTTGCTTTCATGGAACTTACACTGCAGTGGGAAAATAGACATGAAATCATACACACTGGACATGAGCTAATATGTGAAAGAAAAAGAACAGGTTCAGTCAGGGTGCATGGTAGGGCCAATGGCCTCTTCAAGGATAAGGCATTTCAGCTGAGACATGGAAGGTGTGATGTAGCTGGGGAATACCAGTTGTAGCCAATGAGTGTGAAGGACCTGAGCAGGGAGCCCTTGGTACCTCTGAGATAATGGATGGCCCTTGTGGCTGAGGTCAGTGAGCAAAGGGAGGAACACAGAGATACACTAGGGGCCGGGCATGGTGGCTCATGCTTATAATCCCAGCACTTTGGGAGGCTGAGGCGGCCAAATCACTTGACCAGTCTGGCCAACATGGTGAAACCTCGTCCCGACTAAAATCACAAAAATTAGCCGGGTGTGGTGGCACGTGCCTATAATCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATCGCTTGAACACGGGAGGCGGAGATTGCAGTGATCCGAGATCGAACCACTGCGCTCCAGCTGGGGCAACAGAGAGAGACTCTGTCTCAAAAAGAAAAAAAAAGATACGCTAGGAAAGGCAACCACGTTATGAAGTTTGGGTTCTGCACTGTGGGCAGAGGGAAAGCACTGTAGAAATAGAGGCAAGCCATGATTTTATGGTCCACCTGGAGAGGATATAAATATTGTGCTTCTCACAAATTATTCACCTGCTAGTTTCAGAAGTCATTGATAGTTTTCTCTTGGATCAGATATGATTAATAGTTACAAAATAGTGATTTTTAAAAAAACTTTATTCTTATTTATTAGATCACATACTCCTGTAAAGAAGAGCTTTCTCCCTTTCACCATTTGTTTCTTCATTTATATCATATGGATTAATAGTAGGTGGCATATTTTTTCTCATTTCCAGGTCAGAATAAAATAAATCTTGTTTTATCCTGTAACAGATTATTACCCATTATCATTATTTATCACAACGTTCATAGTTTTCCAGACTTGCCCAGTGACACCCTTTCAAACTGGCTCCTGGGTTCTTTGGACATAATCCCCCCCCCCTTTTTTTATAAGCACGTTTTTAACTTTTTTAGTTTCAACAATTCAGTAAAAGCTAGTTAACATAAATACAGAAGAAGTCCACACAATTGACATCCGTGTACATAAATGCAAGAATGCCAAACCTCACATGAACCAAAAAGTATCAGCTCTTACAATGTTGACTATTTAGCTATGACTAGTAGGTCATAAATCTTCGCATAAGCAAGGGTACACATTCAAATGTTTTTTAAAACTAAGAATAAAACAATTTTATGTTTCTAAAAGGAGAAGCATAAAAGTCAATCTGTCGAAGAACATAAGGATGTGATAGAAAAGAGATTTGCGTGGGCACAAAGTTAATACACTGTGTTAATACTTTTACATATTAAAATCCCTCTGCAGCCAGGCGTAATAACTCATGCCTGTAGTCCCAGCTACTCAGAAGGCTGACAGAGGAGAATCACCTGAGCCTAGGAGTTTGAGGTTGTAGTATAATATGATTGTGCCTCTGCACTCCAGCCTGGGCAACAGAATGAGACCCCATCTCCCCTGCAAAAAAGAAAGAGAAAGAGAAATACTTTGGAGGCAAACTTTATATAGAACGTTTGTATATAGTTTTTTTTTAAGTCATCAGTGTCATACTTAAACTAAAATGCAGATTGTGTTTTTGTCTCCAAACTGATTGTAATACTTTTGAGTCCAATCAAAACACCTCAGAAACATCCAGTTACTGTTGATTACAATAAATGTGACATGCTGACAGAATTTAAGAAGGTACAGTTTTTCACTGGTGAGAGCAGTAAAAGCTTGGTAATTTTCAATAATGTTGGGATCACTACAGTGAATAGATCTGCAGAACAACATATCTAAAACCCAGACAAATGTTAGGAATACTGGTTCTGTTGAATAAATGACCAATGTTTTTATAGAAATACGTAACATAGAATTCCCTCCTGCTCTTTCACCCTCAATAAATGCTATAAAGTGCATTCACAAAGAGCCATATTAAGATAAAGCTACTGCACAAAATACAGCACTCATATATACTGAAATGAGTAGTATCACACTGGAGTTTAATTGTGCACATTTTATATACCAGTATAGCAACATCCTTAGCCAGAAGTCTCAACAGAATTATCATGAACATAAACGTTTAAGGGTTATATACATATATCAATTTAAAGTATGAAAAGGTGCATTTGAACTTCATGGCAACATTTAAAAATGATATCCTTGTTAGCACATCACCTTGAATCTATGATGTATGATTCAGCAAATTAGGACAGAATCAAATTCTCAGCAAAAAGTACTTTGAGGCTGGGGATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAATATGGCGAAACCCCATCTTTACAAAAAAGCACAAAAATTAGCTGAGCATGGTGGTGCCCACCTGTAGTCAAGCTATATCTGAGTCTCTTTAAGTCAACTGGGGTTGGTTGCTATAAGTACAGTAAAACCTGCCACTGTAGCTGAAATAATGTACCAGGTAGAATCACAGTCCATTATAGCATTCAGCTTTTTCATGCAGTTTGAATAATCAGCAAAGTATGTTGCTCTAGAAGGACCCACCCTCAATCAACTGGCCTAATCCTCTAAACAAGGAAAAAAGCCCTTCTTTTTCCAAGGTCACCTTTAAGAAATGAAAAGGTTCAGGTAAATGCATGACATTTAAGAAATTTAAGAAATGTCATTCAGTTGATAATGGGCTTCAGCCATGGCGTTCAACTAAACTTCAGATATAAAAAACACCATGGTGTTCAGCTAAACTTCAGATATAAAAAGCTTCACAGAGGAAGACAGCAGCCATGTCATTCTAACTTCTAGCGGACACATGAGAATAGCTGCCACTGTACCAGCATATTCCTCTGGTTCATTCTCCTGCATGTCCTCCAGGCACTGAGGCAGGTTGCAGATCCAACCACACACTTCCAACACCACTTTTATTTTTATTTTTTAAAACTGTGGTAAAATACAAGATTTACCGTGCTCACCATTTTCAAGTGTACAGTTCAGTAGTGTTAAGTACATTCACACTGTTGTACAACCATCATCACCGTCCATCTCCGGAACTCTTTTCATCTTGAAATCCCCATCATCTTTTTAAAATTCACTCTTTTGGGGGCATAATTTATGGTCAATAAAATGCATTTTTAAAATGTGCTATTAATGAGTGTTGACAAATTTATACACCCACATAACCATCACCTCAATCAAGATAGCGAACATTTCCATCAACCCAAAAAGTTCCCTTGTGCTCCCTCCTGCACAGTCCGTCAAACCAATGATTTGCTTTGGTTTCTGTCACTCTATATTTGTCTTTTCTAGAGTCTCACAGAAACATTTACTGTCTTAAAAAATATTGTTCAATAGTGATTCTGACCCACACCAACTCTTTTTTTTTTTTTTTTAAAGTCTCCCTCTGTCACCCAAGTTGGAGTGCATTGGCGTGATCATAGCTCTCTACAGCCTCTAACTCCTGGGCTTAAGCAGTCTTCTTTTCTCAGCTGGGACTACAGGCATGTGCCACTGCAGCTGGCTAATTTTTAAAAATTATTTTGTAGACATGGGGTCTTGCTGTGTTGCTGAAGCTGGTCTCAAACTCCTGGCCTCAAGTGATTCTCCCTTCTTGGCTTCCCAAAGCACTGGGATTACAGGCATGAGCCACCATGCCCAGCCCCACACTAACATTTTAGAATCACTTTTATAACCTCTCTTATTGCCTCCCTCATCTCATGTATGTTATTTTCCTTTCACTGTTCTACTTGTCCATTTTATAATTGCTTAGCTACATTCAAGAGTTAATAGGCATTGAGTCTAAACCCTCCAGTTCTTATTTTAGTTCCTTTATCTGGAAAAAAAAAGAAGCCAAACATATTCGCTTTTTTTCATTCTTAG
Seq C2 exon
TATTGGAGTCCAGATATGATACCAAGGAATTATTTCCAAAGCAGCATGTTTATGAAGTCGAATCACCCCAATGGGAGATAATGGAAAGCCTTACAAGTTATGGTCTTGAGTGTTCAAGTTTCCAAGATGATTGGGAATGCAGAAACCAGTTTGACAGACAACAGGGAAATCCAGACAGACATTTCCATCAGATGATCATCAGACATGAAGAAATGCCCACTTTTGACCAGCATGCATCCCTTACTTTTTATCAGAAAATTCATACTAGAGAAAAACCTTTTGGGTATAATAAATGTAGAAAAGACTTCTGGCAAAAGGAACTCCTTATTAATCATCAAGGAATTTATACTAATGAGAAACCCTATAAATGTAAGGAATGTGGGAAGGCCTTTAAATATGGCTCACGACTAATTCAACATGAGAATATTCATTCTGGTAAGAAACCATATGAATGTAAGGAATGTGGAAAGGCCTTCAATTCTGGTTCAAATTTTATACAACATCAGAGAGTTCATACTGGTGAGAAACCGTATGAATGTAAAGATTGTGAGAAGGCCTTTAGTCGAAGCTCACAGTTGATTGAACATCAGCGAACTCACACAGGCGAGAAACCCTATCAGTGTAAGGAATGTGGCAAGGCCTTCAATCGGATCTCACATCTTAAAGTACATTATAGAATTCATACTGGTGAAAAACCCTATGCATGCAAGGAATGTGGGAAAACCTTTAGTCATCGTTCTCAGTTGATTCAACATCAGACTGTTCATACTGGCAGGAAACTCTATGAATGTAAGGAATGTGGGAAGGCTTTTAATCAAGGCTCAACTCTTATACGACATCAGAGAATTCATACCGGTGAGAAACCCTATGAGTGCAAAGTATGTGGAAAGGCCTTTAGAGTGAGCTCACAACTCAAGCAACATCAGAGAATTCACACTGGAGAGAAACCCTACCAATGTAAGGTATGTGGTAGGGCCTTCAAACGGGTCTCACATCTTACTGTACATTACAGAATTCATACAGGTGAAAAGCCATATGAATGTAAGGAATGTGGGAAGGCTTTTAGTCATTGCTCACAATTGATTCATCATCAGGTTATTCACACTGAGAAAAAGCCCTATGAATATAAGGAATGTGAGAAGACCTTGAGTCATGATTCAACTACCGTTCAACCTCAGAGAATGCATAATAGAGAAACACATGTGAATATAATAAATGTAGAAAAGCCTTCCATCAGCAGTTACCCCTTACTAATCATCAGAGAATTTATGTTGGCAAGCAACCATATGAATGGAAGTAATGGGGAAAGCCCATTAGCCTAGGCTAATTGTGACTGTGACTTACTTCTCCCTCTTGGAGAAAGACTTGAAGAATGTAATGCCAGTGACAATGCCTTCATTCAGAGGTAAGCCTTTATCCTAAGTCTGAAAATTCATATCAAAGAAAATTTTATGGATGTAAATTGTTCAGATCATAATTGTCAAAAATGCTGGGAAAGGTTGGGAGAAATTTTATTTCTAACACATTCCAGAACCACATTTTCTAACCACAGTGTAGTAATTTTATCAAGAGCAAAAGTTATAGTTTTCTTACAAGTTAAAAAAACAGCCAGATTATCATTTGCTTAACAAAGAAATCATGCAATTACCATAAATGGTAATGAAAAGAATGAATTGAGAGTTTAACATGCCAAGAGATGTGAAATGTGGCCAAAGAGATGTGAGGGTAAGGGGAAAGCCAAAGCTACACTGGAGGAATTTTTATAGCCTTTGAATGCATGCATATACATGAAAATCTGAAAGATAAACTCATATGCACTAAACATGCTATTCAAGTCTACCAAACATCCAGGCAGTGAAAGAAGAAAGTAACAGAAAATGATGAAATAAAGAGACCATCTTACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018869-ZNF582:NM_144690:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)