HsaEX1045287 @ hg38
Exon Skipping
Gene
ENSG00000272602 | ZNF595
Description
zinc finger protein 595 [Source:HGNC Symbol;Acc:HGNC:27196]
Coordinates
chr4:53285-60153:+
Coord C1 exon
chr4:53285-53491
Coord A exon
chr4:59430-59556
Coord C2 exon
chr4:60058-60153
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGATAAATATGTGTTTTCAGGAA
3' ss Score
8.59
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
AGAGAGGAGGGGTTGGCTTCCGGGATCTGGCGCGGCGTTTTCCTCTGGCTCCTGCGAGGGCTTGGTTTAGGGCTTCAGCTCTCTGCGTTCTCGGCTCCGGGAGGCCTCGGTGATTCAGCCACAGCCTCTGCCTCCCGTTGCTCTGTGACCTGAGGGTATTGGACAATTTGTAGCTAAGACTCCCGGATACCCTGAAGTCGGGAAATG
Seq A exon
GAACTCGTAACATTCAGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATGTCTGGACCCTGCCCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGG
Seq C2 exon
GTTTTGTGATCTCTAACCCAGACCTGGTCACCTGTCTGGAGCAAATAAAAGAGCCCTGCAATTTGAAGATACATGAGACAGCAGCCAAACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272602-'0-7,'0-5,8-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENST00000610261fB30842
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCTTGGTTTAGGGCTTC
R:
GGTTTGGCTGCTGTCTCATGT
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains