HsaEX1045359 @ hg38
Exon Skipping
Gene
ENSG00000160229 | ZNF66
Description
zinc finger protein 66 [Source:HGNC Symbol;Acc:HGNC:13135]
Coordinates
chr19:20776425-20793878:+
Coord C1 exon
chr19:20776425-20776450
Coord A exon
chr19:20792512-20792638
Coord C2 exon
chr19:20793783-20793878
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTATATTTTTCAGGGG
3' ss Score
9.8
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
CAGGACCCCCTGGAAGCCTAGAAATG
Seq A exon
GGGCCATTGCAATTTAGAGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCATTGCCTGGACATGGCACAGCGGAATTTATATAGGGATGTGATGTTAGAGAACTACAGAAACCTGGTCTTTCTTG
Seq C2 exon
GTATTGTTGTCTCAAAGCCAGACCTCATCACCCATCTGGAGCAAGGAAAAAAACCTTCGACTATGCAGAGACATGAGATGGTAGCCAACCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160229_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.244
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3),PF0090213=TatC=PU(13.3=30.2)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0090213=TatC=FE(32.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCCCTGGAAGCCTAG
R:
GGTTGGCTACCATCTCATGTCT
Band lengths:
114-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains