HsaEX6000659 @ hg19
Exon Skipping
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:29970]
Coordinates
chr11:7718256-7722032:-
Coord C1 exon
chr11:7721843-7722032
Coord A exon
chr11:7720297-7720320
Coord C2 exon
chr11:7718256-7718346
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTTTTCCTTTCCCAGGTA
3' ss Score
12.1
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGAGATTCAGGAGGTTCACTCATGTGCCGGAATAAGAAAGGGGCCTGGACTCTGGCTGGTGTGACTTCCTGGGGTTTGGGCTGTGGTCGAGGCTGGAGAAACAATGTGAGGAAAAGTGATCAAGGATCCCCTGGGATCTTCACAGACATTAGTAAAGTGCTTCCCTGGATCCACGAACACATCCAAACTG
Seq A exon
GTAATCGGAGAAAGAGCTCCAGAG
Seq C2 exon
CCTGGTGCAGTGAGCAGGATGTCATAGTCAGCGGGGCTGAGGGGAAGCTGCACTTCCCAGAAAGCCTCCACCTATATTATGAGAGCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(23.0=87.5)
A:
NO
C2:
PF0043115=CUB=PU(25.9=90.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATCAAGGATCCCCTGGG
R:
CCGCTGACTATGACATCCTGC
Band lengths:
110-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)