HsaEX6000659 @ hg38
Exon Skipping
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr11:7696709-7700485:-
Coord C1 exon
chr11:7700296-7700485
Coord A exon
chr11:7698750-7698773
Coord C2 exon
chr11:7696709-7696799
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTTTTCCTTTCCCAGGTA
3' ss Score
12.1
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGAGATTCAGGAGGTTCACTCATGTGCCGGAATAAGAAAGGGGCCTGGACTCTGGCTGGTGTGACTTCCTGGGGTTTGGGCTGTGGTCGAGGCTGGAGAAACAATGTGAGGAAAAGTGATCAAGGATCCCCTGGGATCTTCACAGACATTAGTAAAGTGCTTCCCTGGATCCACGAACACATCCAAACTG
Seq A exon
GTAATCGGAGAAAGAGCTCCAGAG
Seq C2 exon
CCTGGTGCAGTGAGCAGGATGTCATAGTCAGCGGGGCTGAGGGGAAGCTGCACTTCCCAGAAAGCCTCCACCTATATTATGAGAGCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378-'7-8,'7-6,9-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(23.0=87.5)
A:
NO
C2:
PF0043115=CUB=PU(25.9=90.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATCAAGGATCCCCTGGG
R:
CCGCTGACTATGACATCCTGC
Band lengths:
110-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains