HsaINT1025925 @ hg38
Intron Retention
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr11:7698750-7700485:-
Coord C1 exon
chr11:7700296-7700485
Coord A exon
chr11:7698774-7700295
Coord C2 exon
chr11:7698750-7698773
Length
1522 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
TCCTTCTTTTCCTTTCCCAGGTA
3' ss Score
12.1
Exon sequences
Seq C1 exon
GGAGATTCAGGAGGTTCACTCATGTGCCGGAATAAGAAAGGGGCCTGGACTCTGGCTGGTGTGACTTCCTGGGGTTTGGGCTGTGGTCGAGGCTGGAGAAACAATGTGAGGAAAAGTGATCAAGGATCCCCTGGGATCTTCACAGACATTAGTAAAGTGCTTCCCTGGATCCACGAACACATCCAAACTG
Seq A exon
GTAACTAAGCCATCACACAAGGTTAAGAAGCTGCCATTCTGCTAGGGCCAGAGACAGCATCAGCAGAGTCCTGGCAAATCAGAGCACCTGAACCAACAGGCTCTACCTCTGTTCTCAGTGTAGCACACAAGGATTGTGAGGTTTACCAAGTCTAAATAAAACAAGAGTAAAATATGGTATGTGGAGCAGCATGCAGATATTCAATGAAAAATGAATCCATCCATCCTAGACCTTCTCAAACTGGCCTTTAATTGAAACTATCTCAGTTGATGATATGCTTTCACCACTTACTTCTCTGGATTCAGAGTCCAGAGTGCTCACCATTACACGATGGCACCACTTACTTCTCAAAAAAATCCAGCAAACTATAACAGATCAGTAGTTATCAACCAGGGGCAATTTTGTCCCCAGGGACAGTATCAGAAGACATTTTTAATTGTCACAACTGGCAGAGCTGAGGAGTGGCTCTGGTGTCCAGTGGGTAGGGGACTTGGATGCTGCTAAACATCCTACAAAGTACAGGACAGCCTCCCACAACAAAGAATGATCCCACCCAAAAGGTTAATAGTACCAACAATGAGAATCCCTGGCGTAGATCCAGGTATAGTAAGTCTGCAAAAGCCAGGATCTACATGCAGCCAGGCCTCCGTATCTGCAAGTTCCATGTCAGCAGATTCAACCAACTGTGGATCAAAAATATTTGGAGAAAAATAAAAACAATAAAAATAACAGTACAATAATAATGACAATACAAATTTTTAAAAATACAGTGTAACAACTATTTACATAGCATTTACTTTGTCTTAGGTATCGCAAGCACTCCAGAGACAATTTAGAGTGCTACATAGGGGAAGACATGCCTAGGTTACATGCAAATACTATGCCGTTTAATCTAAGGATTTGAGCATCCTCGGATTTTTGGTATCTGCAAGGGTTCTGAAACCAATCCCCCACAGATATTGAGGGATGAGTGTACACCCTTGTGATAAACTGACTAGAGAGCTCATTGCAACTTCTTTGCCTCCTCCAAATCCAACTTAATTGTTTTCTTATCTGGTGGCTTCCAACCTCAAAAAGGCTTTTATCCTTTTCTAAACAAGTTAATTTAAATTAAGTTTAGTAGGAATTTGAGTTTGTTTTCAAGTGTATGGTACAGTGGCAGGTATCTGAGCCCTCAGTTAAAGTTTGACCTATTTAACCCAGCAACTCTTTTATAGTTATGGACAAACTATTTCCATCTCTAGCCTCTGTTCTTATGTAAAATGACCCCTTCCTCTGTGAAACCTCCAGTTAATTACCATTTCATATTAGCCCACTTAATAAAGAGAATTAAATCATTTTAAAACACCAGAGGCCCTTTCCTACTTTATCCATTTATCCCTTCCCTTCTTTCCACAGATAAGATTTTTATTAGTTGCATATTGACTTAAAAATCTCTTGTGCGCCAAGAAGATGCTAACTTCTTGAAGCGTTGTTCAGGATACCACAGGCTTTCAATTGCATCCTTCTTTTCCTTTCCCAG
Seq C2 exon
GTAATCGGAGAAAGAGCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378:ENST00000533663:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(23.0=87.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains