BtaINT0106493 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037921 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr15:45611308-45613929:+
Coord C1 exon
chr15:45611308-45611513
Coord A exon
chr15:45611514-45613921
Coord C2 exon
chr15:45613922-45613929
Length
2408 bp
Sequences
Splice sites
5' ss Seq
AACATAAGG
5' ss Score
-0.85
3' ss Seq
ATTATGAGATTATGCATTAGTTC
3' ss Score
-2.84
Exon sequences
Seq C1 exon
GGAGACTCAGGAGGTTCCCTCATGTGCCGGAATAAGAAAGGGACTTGGACTATGGCTGGTGTGACTTCCTGGGGTTTGGGCTGTGGTCGAGGCTGGAAAAACAATCTGCAGAAAGATGATCAAGGATCCCCTGGGATCTTCACAGATCTTACTAAAGTGCTTTCGTGGATCCACAAACACATCCGAATTGGTAATCAAGCCAAAAC
Seq A exon
ATAAGGTCAAGAAGCTAGGGAAGGAGAGAACATCAGCAGAGTCTAGGCAAGTCAAGATCATTGAGCAGATGGACTCTGCTTTCATTCTGAGTGTCTCGCATAAGGATTGTGGTATTTACTGAGTCTAAAAAAAGGACCAACTATGATTCACACAGCATACAGCTATTCAATGAAACATGAGTACATCCATCCTAGATTTTGTCCAATTTGCATTTAATTGAAACTGTCTCAGCTGGTGATATGTTTCCACCACTTACTTCTCACTTACTGTGCTAGCAAGATTCAGCAAGCTGTAGCATAGGTTGGTGGTTATCAACCAGGGGGAATTTTGCCCCTTCAGGGGACAGTGACTGGAGATGTTTTTGGTTGTCACAACAGGAGAGAGAGGAACCACTGGTGTCTAGTGGGTAGGGGGCCATGGATGCTGCTAAGCATCCTACAAGGCACAGGAGAGCACCCCCACTCCCACCCAGCAAAGAAGGATTCAGCCCCAAATGTTAATAATGCTGTGGCTGAGAAGGCCTGACCTAGAGCCAGGTACAGTAAATCTGAAAAGGCCAAGGTCTATATATATCCTTCTACTAGACTGACCAATGAGTTAATTGAAACTTCATTTTTTTGCCTCCAAATCCAACTTAACTGGTGGCTTCCAACCTCGATAGGACTTATGTTCTTCCCAAAGGGGTTAATTCAAACTAGTTCAGGAAAAACTTGTGATTGTGTTCACGTTTATGGAACACTCACAGGTATTTGAGTCCTCAGTTCAAGCCATAGCTACCTCAGCATCTCTTTTGTGATTATGGGTACGTTATTTCCATCTCCAGCCTTTCTTTTCATGAAAAATTAGAAGGGTAGCCCAGATGACCTCTTCTTGCTTTGCATAATCCCCAAGCCAATGAACACACTTAATAAAGAGAGTGAACCATTTTCTTAAAACACAAAGGCTCCTCTGCTGCTTTGTCAATTTATCCCTTCTGTTCTCTCCACAGATTATATTTTCATTAGTTGCAAACTGACTTAAAAACCTCTGTACTTTTGGGCCAGGGAGATGCTAACTTCTTGAAATATTGTTCAAGATACCACAAACATTGAATCCCATCTTTCTTTTTCTTTCCCAGGGAAGCAGAGAAAGAGCTCCAGAGGTGGGTATTTTTCATCGCCTGCTCTTCTGGGAGCATGAATTAATCTCTACTATTTCTGAATATCGGTTCCCTTTATAATCAGAAGTCTTCCTCTGCAAGAGTTCTCCATACTGACTATGCATGACAACACCACTGGGCACACTCGGTCATTCATCCCCAGCCAGTGAGGGCGCACCCTCACCAGCAGGAGCCCACACTCCCTTCCAGTTCACTTCTTGTCAATCCAGAGCTCCAGCTCAAGTCAACAAACAGTTGTCAAATTCTCAGTTTGGATCTCAGACATGAGGGAGGAGGTGAAGTGGATAGTGGTCAGGTTTCCGAGCTCAGCTTGTTCAGAAAGCACAGGGAACCCACCCCAGGGTTACATTGCAAGTCTTCAGTGAATTCACTCTGATTTGGAGCAAGCTCCTTTCTGCCTCTGAACCTGAGTCTCCTTATCCGAAAAGGAAGCAGTTTGGACCAGATGGTCTCAAAGGCATCTTTAGCTCAGCAGTTCTGTGAGCCTGTGGAACCAACTCCAAAGAGCAAAGTGGGAAAAGAGTACCCTGAGAGCTCAGTGGAGAGAATGGCTGCTTCTAGCTGGAAAAAGACAAAAAGACACAGGAGGCTTTGAAGCACAGACATCTTTTAACCTGAACCTTAGAGAATAAAGGATGAATAAAATTTTGTCAGGTGGGGATGGGATACAGGTAAAGAAAAATATTCCAGCTCAAGGAATCATTCTTATCAGAAGATGGATACTAAAAGATGAAGATAGGAAAATTTAGGGTGTAATCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCTAAGAGTCGGACACGACTGCGCGACTTCACTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGTCGGGGGAGCCTGGTGGGCTGCTGTCAATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGAGACCCAGTAAGTCAAAGCAGCTAAAGTGTAGGATATGTGAGGGATTTTATGAGACAGAAGATTAAACATATAACTTGAGACCAAATTATGGAAACTTTGAACACCAGTCAAAAAAATTTAGATTTTATTGAGTAATAGGAGTTGACTAACTAGATAAATAGATTAGAGCTATACTGAATTGCTATAAGAACTGTACATAGGGAATAAACTGGAGGAGAAATAATGCATAGTAGAATTATGAGATTATGCATTAG
Seq C2 exon
TTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037921:ENSBTAT00000063712:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(23.0=81.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development