GgaINT0055928 @ galGal3
Intron Retention
Gene
ENSGALG00000005318 | F1NZZ9_CHICK
Description
NA
Coordinates
chr5:8361915-8363535:-
Coord C1 exon
chr5:8363350-8363535
Coord A exon
chr5:8361919-8363349
Coord C2 exon
chr5:8361915-8361918
Length
1431 bp
Sequences
Splice sites
5' ss Seq
AATATGAGT
5' ss Score
-0.38
3' ss Seq
ACATAGGTTTTTTTTTCTAGCTC
3' ss Score
6.3
Exon sequences
Seq C1 exon
GGAGACTCTGGGGGTCCTCTCTTGTGCCGACGTAAGCATGGTGCCTGGATTCTTGCTGGTGTGATTTCCTGGGGGATGGGATGTGCTCGTGGCTGGAGAGGTAATGAGATGAAGAGACATTACGAAAGAGGGTCTCCTGGAATATTCACAGACCTCAGTGCAGTGCTTTCCTGGATTCAAGAAAAT
Seq A exon
ATGAGTGCTGGTATTAAGTCTCTACAAAAATTTCTCTCTCACCTCTGTCATTTTTCTGTCTCATAATCATATTTCATTTAATTTTATCTTTTTCAAGATACAGTACTAATATTTCTCCCCCTGGAAACTAGCTTCAGAGGCTGAGGGAGCTGGGGCTGTTTAGCCTGGGGGAGAGGAGGCTGAGGGGAGACCTTATTACTCTCTTCCAGTACCTGAAAGGTGTTTACAGTGAGAGCGGGGTAGGTCTCTTCTCACTGGTGACAGGTGACAGGACGAGGGGAAATGGCCTCAAGTTGCGCCAAGGCAAGTTTAGGTTGGACGTTAGGGAACACTTCTTTACAGAAAGGGTGGTTAAGCGCTGGAATGGGCTCCCCAGGGAGGTGGTTGAGTCACCATCCCTGGATGTGTTTAAGAGCTGCTTGGATGTGGTGCTCAGAGATATGATTTAGCGGAGGGTTGTTAGAGTTAGGGTACTATGGTTAGGCTGTGGTTGGACTTGATGATCTTTGAGGTCCTTTCCAACCTGAGTAATTCTATGATTAGAAAAAAAGTAAAGGACCTTCATATTGTCAAAGGAAAATGAATAGGGTTTAGCTTCTGGAAAATCTGTTTTCAATTAAAGAAAAATAAGAGAAGGGCGATGTCTTTTCTATATGAATTTACAATAATGGATCATTGAGTTTTCAGGAAAAAAAAAAAAGATTAACCAAAATTACTATAGAAACTAAAGATTATTGGCTCCAATGAGCAGAAAAAGTGATTTGGTGAATGAAGTGGGCGTGCAGTTCTCAGTTGCATTACACTGGGTTTTACTACCCACTTTTTTACACCGTTGCACTGGTACGAAGAATCTTGACTGTTACTGCTGTCAGGCTTAGCATCTCTGTGTCCCTGGTAATAAGGTGGCAGTTGGATTCTGCTACCCTATCTTGAGATGTGTAGTATTTATTCAACAGGTATATACAGAGAGAATGTTGCTCAGACTGAGAGGCCAATCAGTGTATTATTAATTCTAGATGCGTTGTCTCTAGAGTTGGTTATTCTGAAGTCAGCTTTGCCTGAACTTGTAACTTTGATTCCACACATACTTTACTGTAGGTACTGTGAACTCAAGAATTCAAACTTACATCAGTGCTAGCTGTATAAACCTGCTATTTCACACTGTTAAAAATAAAGCCTACTTTGTGAGTGTGAAACTATAATAACACATTCTTTTTTCACTCCCTTCCCTATCCCTCCTTCGTTAGATCTGAAAATGAAAAGTTCCACACGTGAGTACTGTTTTTTCAGCATTTTGTATCTGCATTAGAGTCTAACCAGCCTTCTCAAATAATTTCATATGTGATCTGTGAAGAAAAAAACATATTTATAGCATGACTTATTATCACACTTTAAAATGCATACTTTAAATACATAGGTTTTTTTTTCTAG
Seq C2 exon
CTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005318:ENSGALT00000008522:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(23.7=93.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]