HsaINT0119114 @ hg19
Intron Retention
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:29970]
Coordinates
chr11:7720297-7722032:-
Coord C1 exon
chr11:7721843-7722032
Coord A exon
chr11:7720321-7721842
Coord C2 exon
chr11:7720297-7720320
Length
1522 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
TCCTTCTTTTCCTTTCCCAGGTA
3' ss Score
12.1
Exon sequences
Seq C1 exon
GGAGATTCAGGAGGTTCACTCATGTGCCGGAATAAGAAAGGGGCCTGGACTCTGGCTGGTGTGACTTCCTGGGGTTTGGGCTGTGGTCGAGGCTGGAGAAACAATGTGAGGAAAAGTGATCAAGGATCCCCTGGGATCTTCACAGACATTAGTAAAGTGCTTCCCTGGATCCACGAACACATCCAAACTG
Seq A exon
GTAACTAAGCCATCACACAAGGTTAAGAAGCTGCCATTCTGCTAGGGCCAGAGACAGCATCAGCAGAGTCCTGGCAAATCAGAGCACCTGAACCAACAGGCTCTACCTCTGTTCTCAGTGTAGCACACAAGGATTGTGAGGTTTACCAAGTCTAAATAAAACAAGAGTAAAATATGGTATGTGGAGCAGCATGCAGATATTCAATGAAAAATGAATCCATCCATCCTAGACCTTCTCAAACTGGCCTTTAATTGAAACTATCTCAGTTGATGATATGCTTTCACCACTTACTTCTCTGGATTCAGAGTCCAGAGTGCTCACCATTACACGATGGCACCACTTACTTCTCAAAAAAATCCAGCAAACTATAACAGATCAGTAGTTATCAACCAGGGGCAATTTTGTCCCCAGGGACAGTATCAGAAGACATTTTTAATTGTCACAACTGGCAGAGCTGAGGAGTGGCTCTGGTGTCCAGTGGGTAGGGGACTTGGATGCTGCTAAACATCCTACAAAGTACAGGACAGCCTCCCACAACAAAGAATGATCCCACCCAAAAGGTTAATAGTACCAACAATGAGAATCCCTGGCGTAGATCCAGGTATAGTAAGTCTGCAAAAGCCAGGATCTACATGCAGCCAGGCCTCCGTATCTGCAAGTTCCATGTCAGCAGATTCAACCAACTGTGGATCAAAAATATTTGGAGAAAAATAAAAACAATAAAAATAACAGTACAATAATAATGACAATACAAATTTTTAAAAATACAGTGTAACAACTATTTACATAGCATTTACTTTGTCTTAGGTATCGCAAGCACTCCAGAGACAATTTAGAGTGCTACATAGGGGAAGACATGCCTAGGTTACATGCAAATACTATGCCGTTTAATCTAAGGATTTGAGCATCCTCGGATTTTTGGTATCTGCAAGGGTTCTGAAACCAATCCCCCACAGATATTGAGGGATGAGTGTACACCCTTGTGATAAACTGACTAGAGAGCTCATTGCAACTTCTTTGCCTCCTCCAAATCCAACTTAATTGTTTTCTTATCTGGTGGCTTCCAACCTCAAAAAGGCTTTTATCCTTTTCTAAACAAGTTAATTTAAATTAAGTTTAGTAGGAATTTGAGTTTGTTTTCAAGTGTATGGTACAGTGGCAGGTATCTGAGCCCTCAGTTAAAGTTTGACCTATTTAACCCAGCAACTCTTTTATAGTTATGGACAAACTATTTCCATCTCTAGCCTCTGTTCTTATGTAAAATGACCCCTTCCTCTGTGAAACCTCCAGTTAATTACCATTTCATATTAGCCCACTTAATAAAGAGAATTAAATCATTTTAAAACACCAGAGGCCCTTTCCTACTTTATCCATTTATCCCTTCCCTTCTTTCCACAGATAAGATTTTTATTAGTTGCATATTGACTTAAAAATCTCTTGTGCGCCAAGAAGATGCTAACTTCTTGAAGCGTTGTTCAGGATACCACAGGCTTTCAATTGCATCCTTCTTTTCCTTTCCCAG
Seq C2 exon
GTAATCGGAGAAAGAGCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378-OVCH2:NM_198185:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(23.0=87.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)